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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1732Hypothetical protein; No significant database matches. (1139 aa)    
Predicted Functional Partners:
ECA0705
Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa.
     
 0.566
ECA3424
Putative lipoprotein; Similar to Xanthomonas campestris ankyrin-like protein xcc4050 SWALL:Q8P3M1 (EMBL:AE012526) (325 aa) fasta scores: E(): 3.9e-08, 31.22% id in 253 aa, and to Serratia sp. MK1 accessory protein plaS SWALL:Q9X9D9 (EMBL:U37262) (251 aa) fasta scores: E(): 1.5e-07, 26.66% id in 210 aa. Also similar to ECA3425 (83.784% identity in 259 aa overlap).
  
 
   0.548
ECA3425
Putative lipoprotein; Similar to Xanthomonas campestris ankyrin-like protein xcc4050 SWALL:Q8P3M1 (EMBL:AE012526) (325 aa) fasta scores: E(): 2.1e-08, 30.68% id in 264 aa, and to Serratia sp. MK1 accessory protein plaS SWALL:Q9X9D9 (EMBL:U37262) (251 aa) fasta scores: E(): 5.5e-07, 25.31% id in 237 aa. Also similar to ECA3424 (83.784% identity in 259 aa overlap).
  
 
   0.543
ECA1738
Similar to Synechocystis sp. hypothetical protein Slr1618 SWALL:P72896 (EMBL:D90901) (261 aa) fasta scores: E(): 5e-13, 26.69% id in 236 aa.
 
  
 0.539
cfa6
Similar to Pseudomonas syringae type I polyketide synthase Cfa6 SWALL:Q9Z3T9 (EMBL:AF098795) (2731 aa) fasta scores: E(): 0, 60.14% id in 2725 aa, and to Polyangium cellulosum Soraphen polyketide synthase A SorA SWALL:Q9ADL6 (EMBL:U24241) (6315 aa) fasta scores: E(): 0, 43.21% id in 2277 aa.
  
 
 0.533
fliC
Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
     
 0.524
ECA0502
Putative capsulatr polysaccharide biosynthesis protein; Similar to Rhizobium leguminosarum exopolysaccharide polymerization protein PssP SWALL:O85453 (EMBL:AF067140) (746 aa) fasta scores: E(): 8.1e-10, 23.42% id in 730 aa, and to Vibrio cholerae exopolysaccharide biosynthesis protein, putative vc0937 SWALL:Q9KTG5 (EMBL:AE004176) (737 aa) fasta scores: E(): 1.4e-44, 28.87% id in 717 aa.
     
 0.518
vioA
Nucleotide sugar transaminase; Similar to Escherichia coli VioA SWALL:Q9XCW4 (EMBL:AF125322) (371 aa) fasta scores: E(): 1e-78, 59.94% id in 362 aa, and to Xanthomonas axonopodis nucleotide sugar transaminase VioA or xac1966 SWALL:Q8PL40 (EMBL:AE011831) (369 aa) fasta scores: E(): 9.2e-87, 61.43% id in 363 aa; Belongs to the DegT/DnrJ/EryC1 family.
     
 0.515
ECA3479
Hypothetical protein; Weakly similar to Ralstonia solanacearum hypothetical protein rsp0177 or rs04689 SWALL:Q8XTD6 (EMBL:AL646077) (740 aa) fasta scores: E(): 0.00056, 26.34% id in 410 aa.
  
     0.487
ECA4146
Similar to Ralstonia solanacearum hypothetical protein rsp0177 or rs04689 SWALL:Q8XTD6 (EMBL:AL646077) (740 aa) fasta scores: E(): 0.0057, 25.85% id in 410 aa.
  
     0.478
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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