STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vioANucleotide sugar transaminase; Similar to Escherichia coli VioA SWALL:Q9XCW4 (EMBL:AF125322) (371 aa) fasta scores: E(): 1e-78, 59.94% id in 362 aa, and to Xanthomonas axonopodis nucleotide sugar transaminase VioA or xac1966 SWALL:Q8PL40 (EMBL:AE011831) (369 aa) fasta scores: E(): 9.2e-87, 61.43% id in 363 aa; Belongs to the DegT/DnrJ/EryC1 family. (370 aa)    
Predicted Functional Partners:
wcaJ
Putative capsular polysaccharide biosynthesis protein; Similar to Escherichia coli putative colanic biosynthesis UDP-glucose lipid carrier transferase WcaJ or b2047 SWALL:WCAJ_ECOLI (SWALL:P71241) (464 aa) fasta scores: E(): 6.8e-69, 43.62% id in 463 aa, and to Klebsiella pneumoniae probable CPS biosynthesis glycosyltransferase SWALL:YC14_KLEPN (SWALL:Q48460) (465 aa) fasta scores: E(): 1e-69, 43.95% id in 455 aa.
  
 0.896
rfbP
Similar to Salmonella typhimurium undecaprenyl-phosphate galactosephosphotransferase RfbP or stm2082 SWALL:RFBP_SALTY (SWALL:P26406) (476 aa) fasta scores: E(): 3e-129, 64.65% id in 464 aa, and to Erwinia amylovora UDP-galactose-lipid carrier transferase amsG SWALL:AMSG_ERWAM (SWALL:Q46628) (477 aa) fasta scores: E(): 2.8e-131, 66.3% id in 466 aa.
 
  
 0.881
ECA1734
Similar to Shewanella oneidensis conserved hypothetical protein so3184 SWALL:AAN56184 (EMBL:AE015756) (240 aa) fasta scores: E(): 5e-24, 34.34% id in 230 aa, and to Bordetella bronchiseptica hypothetical 27.4 kDa protein bblps1.06 SWALL:O87979 (EMBL:AJ007747) (239 aa) fasta scores: E(): 6.7e-15, 31.03% id in 232 aa.
 
  
 0.785
ECA1735
Similar to Xanthomonas axonopodis hypothetical protein Xac1689 SWALL:Q8PLV0 (EMBL:AE011801) (317 aa) fasta scores: E(): 2.3e-21, 29.74% id in 316 aa, and to Mycobacterium tuberculosis hypothetical protein rv1502 or mt1551 or mtcy277.24 SWALL:YF02_MYCTU (SWALL:P71783) (299 aa) fasta scores: E(): 1.6e-12, 34.82% id in 313 aa.
 
     0.673
ECA1736
Similar to Xanthomonas axonopodis hypothetical protein Xac1689 SWALL:Q8PLV0 (EMBL:AE011801) (317 aa) fasta scores: E(): 3.7e-11, 31.67% id in 322 aa, and to Mycobacterium tuberculosis hypothetical protein rv1502 or mt1551 or mtcy277.24 SWALL:YF02_MYCTU (SWALL:P71783) (299 aa) fasta scores: E(): 0.0028, 31.56% id in 320 aa.
 
     0.671
ECA1738
Similar to Synechocystis sp. hypothetical protein Slr1618 SWALL:P72896 (EMBL:D90901) (261 aa) fasta scores: E(): 5e-13, 26.69% id in 236 aa.
 
   
 0.664
rffG
Similar to Escherichia coli dTDP-glucose 4,6-dehydratase RffG or b3788 SWALL:RFFG_ECOLI (SWALL:P27830) (355 aa) fasta scores: E(): 6.4e-119, 83% id in 353 aa; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
 0.664
arnA
Probable formyl transferase; Bifunctional enzyme that catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto- arabinose (UDP-Ara4O) and the addition of a formyl group to UDP-4- amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido- arabinose (UDP-L-Ara4FN). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; In the C-terminal section; belongs to the NAD(P)-dependent epimerase/dehydratase family. UDP-glucuronic acid decarboxylase subfamily.
  
  
 0.595
wecB
UDP-N-acetylglucosamine 2-epimerase; Catalyzes the reversible epimerization at C-2 of UDP-N- acetylglucosamine (UDP-GlcNAc) and thereby provides bacteria with UDP- N-acetylmannosamine (UDP-ManNAc), the activated donor of ManNAc residues.
  
  
 0.577
wecC
UDP-N-acetyl-D-mannosamine dehydrogenase; Catalyzes the four-electron oxidation of UDP-N-acetyl-D- mannosamine (UDP-ManNAc), reducing NAD(+) and releasing UDP-N- acetylmannosaminuronic acid (UDP-ManNAcA); Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. WecC subfamily.
 
  
 0.570
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: medium (56%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.