STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ECA1737Similar to Lactococcus lactis acetyltransferase ycjc or ll0293 SWALL:Q9CIR3 (EMBL:AE006266) (189 aa) fasta scores: E(): 0.0034, 32.46% id in 77 aa, and to Haemophilus influenzae ribosomal-protein-alanine acetyltransferase rimi or hi0010 SWALL:RIMI_HAEIN (SWALL:P44305) (146 aa) fasta scores: E(): 0.053, 27.55% id in 127 aa. (146 aa)    
Predicted Functional Partners:
ECA1735
Similar to Xanthomonas axonopodis hypothetical protein Xac1689 SWALL:Q8PLV0 (EMBL:AE011801) (317 aa) fasta scores: E(): 2.3e-21, 29.74% id in 316 aa, and to Mycobacterium tuberculosis hypothetical protein rv1502 or mt1551 or mtcy277.24 SWALL:YF02_MYCTU (SWALL:P71783) (299 aa) fasta scores: E(): 1.6e-12, 34.82% id in 313 aa.
 
     0.830
ECA1736
Similar to Xanthomonas axonopodis hypothetical protein Xac1689 SWALL:Q8PLV0 (EMBL:AE011801) (317 aa) fasta scores: E(): 3.7e-11, 31.67% id in 322 aa, and to Mycobacterium tuberculosis hypothetical protein rv1502 or mt1551 or mtcy277.24 SWALL:YF02_MYCTU (SWALL:P71783) (299 aa) fasta scores: E(): 0.0028, 31.56% id in 320 aa.
 
     0.821
ECA1738
Similar to Synechocystis sp. hypothetical protein Slr1618 SWALL:P72896 (EMBL:D90901) (261 aa) fasta scores: E(): 5e-13, 26.69% id in 236 aa.
 
   0.816
ECA1734
Similar to Shewanella oneidensis conserved hypothetical protein so3184 SWALL:AAN56184 (EMBL:AE015756) (240 aa) fasta scores: E(): 5e-24, 34.34% id in 230 aa, and to Bordetella bronchiseptica hypothetical 27.4 kDa protein bblps1.06 SWALL:O87979 (EMBL:AJ007747) (239 aa) fasta scores: E(): 6.7e-15, 31.03% id in 232 aa.
 
    0.801
vioA
Nucleotide sugar transaminase; Similar to Escherichia coli VioA SWALL:Q9XCW4 (EMBL:AF125322) (371 aa) fasta scores: E(): 1e-78, 59.94% id in 362 aa, and to Xanthomonas axonopodis nucleotide sugar transaminase VioA or xac1966 SWALL:Q8PL40 (EMBL:AE011831) (369 aa) fasta scores: E(): 9.2e-87, 61.43% id in 363 aa; Belongs to the DegT/DnrJ/EryC1 family.
   
  0.545
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.