STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
betITetR-family transcriptional regulator; Repressor involved in the biosynthesis of the osmoprotectant glycine betaine. It represses transcription of the choline transporter BetT and the genes of BetAB involved in the synthesis of glycine betaine (By similarity). (195 aa)    
Predicted Functional Partners:
betA
Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.
 
 
 0.967
betB
Betaine aldehyde dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid.
 
 0.901
betT
High-affinity choline transport protein; Similar to Escherichia coli, and Escherichia coli O157:H7 high-affinity choline transport protein BetT or b0314 or z0401 or ecs0360 SWALL:BETT_ECOLI (SWALL:P17447) (677 aa) fasta scores: E(): 0, 80.92% id in 671 aa; Belongs to the BCCT transporter (TC 2.A.15) family.
 
  
 0.789
ECA3953
Probable transporter; Similar to Pseudomonas putida major facilitator family transporter pp0702 SWALL:AAN66327 (EMBL:AE016776) (385 aa) fasta scores: E(): 3.2e-42, 39.62% id in 371 aa, and to Rhizobium loti probable transporter mll1210 SWALL:Q98L25 (EMBL:AP002996) (393 aa) fasta scores: E(): 2.8e-21, 27.82% id in 381 aa.
  
     0.420
aldB
Aldehyde dehydrogenase B; Similar to Escherichia coli aldehyde dehydrogenase B AldB or b3588 SWALL:ALDB_ECOLI (SWALL:P37685) (512 aa) fasta scores: E(): 1.4e-172, 83.2% id in 500 aa.
 
 
 0.414
ECA0280
Similar to Escherichia coli succinate-semialdehyde dehydrogenase [NADP+] GabD or b2661 SWALL:GABD_ECOLI (SWALL:P25526) (482 aa) fasta scores: E(): 8.3e-102, 55.41% id in 480 aa, and to Photorhabdus luminescens Orf17 SWALL:AAO17183 (EMBL:AF346500) (490 aa) fasta scores: E(): 6e-104, 57.74% id in 478 aa.
 
 
 0.414
proW
Similar to Escherichia coli glycine betaine/L-proline transport system permease protein ProW or b2678 SWALL:PROW_ECOLI (SWALL:P14176) (354 aa) fasta scores: E(): 1.7e-94, 79.61% id in 363 aa.
 
     0.403
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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