STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1754Similar to Yersinia pestis putative membrane protein ypo1438 or y2732 SWALL:AAM86284 (EMBL:AJ414148) (712 aa) fasta scores: E(): 0, 75.03% id in 709 aa, and to Shigella flexneri orf, conserved hypothetical protein yccs or sf0962 SWALL:AAN42590 (EMBL:AE015125) (721 aa) fasta scores: E(): 5.4e-206, 71% id in 707 aa. (711 aa)    
Predicted Functional Partners:
ECA1755
Putative membrane protein; Similar to Salmonella typhimurium, and Salmonella typhi putative inner membrane protein yccf or stm1074 or sty1096 SWALL:Q8XGG4 (EMBL:AE008746) (148 aa) fasta scores: E(): 8.5e-52, 82.99% id in 147 aa, and to Escherichia coli, and Shigella flexneri hypothetical protein yccf or b0961 or sf0963 SWALL:YCCF_ECOLI (SWALL:P37065) (148 aa) fasta scores: E(): 1.4e-51, 83.67% id in 147 aa.
  
  
 0.806
ECA0018
Conserved hypothetical protein; Similar to Pectobacterium carotovorum subsp. carotovorum YihD SWALL:Q9RB12 (EMBL:AF146615) (89 aa) fasta scores: E(): 6.6e-33, 98.87% id in 89 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 protein YihD SWALL:YIHD_ECOLI (SWALL:P32126) (89 aa) fasta scores: E(): 1.8e-26, 80.89% id in 89 aa.
  
     0.601
nifQ
Nitrogen fixation protein; Similar to Pantoea agglomerans NifQ protein NifQ SWALL:Q52074 (EMBL:X99694) (171 aa) fasta scores: E(): 1.7e-37, 59.64% id in 171 aa, and to Klebsiella pneumoniae NifQ protein NifQ SWALL:NIFQ_KLEPN (SWALL:P10392) (167 aa) fasta scores: E(): 1.8e-33, 58.08% id in 167 aa.
   
    0.539
nifU
Nitrogen fixation protein; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
   
    0.539
icsU
NifU-like protein; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
   
    0.539
helD
Helicase IV; Similar to Escherichia coli helicase IV HelD or b0962 SWALL:HELD_ECOLI (SWALL:P15038) (684 aa) fasta scores: E(): 1.6e-197, 69.29% id in 684 aa.
       0.531
ECA4354
Putative membrane protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily.
  
     0.518
ECA3465
Similar to Yersinia pestis hypothetical protein y0964 SWALL:AAM84545 (EMBL:AE013700) (421 aa) fasta scores: E(): 1.4e-127, 71.56% id in 415 aa, and to Salmonella typhimurium hypothetical protein yafa or stm0318 SWALL:YAFA_SALTY (SWALL:P37722) (414 aa) fasta scores: E(): 8.4e-120, 66.18% id in 417 aa; Belongs to the UPF0255 family.
  
     0.474
ECA2661
Similar to Yersinia pestis putative membrane protein ypo1361 or y2818 SWALL:Q8ZGE0 (EMBL:AJ414147) (298 aa) fasta scores: E(): 4.1e-83, 74.16% id in 298 aa, and to Salmonella typhimurium putative inner membrane protein ybje or stm0938 SWALL:Q8ZQE7 (EMBL:AE008740) (299 aa) fasta scores: E(): 4.3e-75, 67.33% id in 300 aa.
 
     0.468
ECA4240
Similar to Yersinia pestis putative membrane protein ypo3912 or y0323 SWALL:AAM83914 (EMBL:AJ414159) (135 aa) fasta scores: E(): 3e-29, 63.86% id in 119 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein yijd or b3964 or c4927 or z5525 or ecs4895 SWALL:YIJD_ECOLI (SWALL:P27308) (119 aa) fasta scores: E(): 4.3e-29, 65.48% id in 113 aa.
  
     0.420
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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