STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1759Putative CoA binding protein; Similar to Yersinia pestis hypothetical protein ypo1443 or y2727 SWALL:AAM86279 (EMBL:AJ414148) (138 aa) fasta scores: E(): 1.5e-35, 75.18% id in 137 aa, and to Salmonella typhimurium, and Salmonella typhi putative cytoplasmic protein stm1078 or sty1101 SWALL:Q8XGM9 (EMBL:AE008747) (138 aa) fasta scores: E(): 1.8e-34, 72.99% id in 137 aa. (137 aa)    
Predicted Functional Partners:
ECA0820
Similar to Emericella nidulans O-acetyl-L-homoserine sulfhydrylase CysD SWALL:O13387 (EMBL:AF029318) (437 aa) fasta scores: E(): 2.6e-79, 52.47% id in 425 aa, and to Shewanella oneidensis O-acetylhomoserine so1095 SWALL:AAN54166 (EMBL:AE015554) (430 aa) fasta scores: E(): 3.2e-138, 85.21% id in 426 aa.
   
  0.935
metB
Similar to Escherichia coli cystathionine gamma-synthase MetB or b3939 SWALL:METB_ECOLI (SWALL:P00935) (386 aa) fasta scores: E(): 3.8e-129, 87.01% id in 385 aa.
 
   
  0.838
metH
5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
  0.821
zur
Zinc uptake regulation protein; Similar to Escherichia coli, and Shigella flexneri zinc uptake regulation protein Zur or b4046 or sf4159 SWALL:ZUR_ECOLI (SWALL:P32692) (171 aa) fasta scores: E(): 8.5e-46, 68.63% id in 169 aa; Belongs to the Fur family.
  
    0.574
fur
Ferric uptake regulation protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 ferric uptake regulation protein Fur or b0683 or c0770 or z0831 or ecs0714 SWALL:FUR_ECOLI (SWALL:P06975) (148 aa) fasta scores: E(): 9.2e-52, 91.09% id in 146 aa; Belongs to the Fur family.
  
    0.574
ECA1758
Putative exported protein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein ycct precursor ycct or b0964 or c1101 or z1315 or ecs1048 or sf0966 SWALL:YCCT_ECOLI (SWALL:P75873) (220 aa) fasta scores: E(): 1.1e-16, 35.63% id in 174 aa, and to Yersinia pestis putative exported protein ypo1442 or y2728 SWALL:AAM86280 (EMBL:AJ414148) (226 aa) fasta scores: E(): 2.6e-16, 42.85% id in 168 aa; Belongs to the UPF0319 family.
     
 0.520
ECA0389
Putative hydrolase; Similar to Bradyrhizobium japonicum protein blr6677 SWALL:BAC51942 (EMBL:AP005959) (353 aa) fasta scores: E(): 9.7e-77, 55.45% id in 339 aa, and to Caulobacter crescentus hydrolase, alpha/beta hydrolase fold family cc3204 SWALL:Q9A3K0 (EMBL:AE005984) (358 aa) fasta scores: E(): 1.5e-48, 44.41% id in 331 aa. Note that there are no significant database matches to enterobacterial species.
 
  
  0.465
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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