STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ECA1768Similar to Bacteroides thetaiotaomicron putative acetyltransferase, bt1464 SWALL:AAO76571 (EMBL:AE016931) (152 aa) fasta scores: E(): 3.3e-31, 50.68% id in 146 aa, and to Lactococcus lactis unknown protein yuid or ll2008 SWALL:Q9CE40 (EMBL:AE006430) (152 aa) fasta scores: E(): 6.2e-31, 50.34% id in 147 aa. (151 aa)    
Predicted Functional Partners:
ECA1767
Isochorismatase family protein; Similar to Lactococcus lactis hypothetical protein yvea or ll2054 SWALL:Q9CDZ6 (EMBL:AE006436) (176 aa) fasta scores: E(): 5.4e-12, 33.53% id in 167 aa, and to Clostridium acetobutylicum amidase from nicotinamidase family cac3465 SWALL:Q97DL0 (EMBL:AE007844) (178 aa) fasta scores: E(): 1.5e-09, 30.23% id in 172 aa.
  
    0.773
ECA1766
Similar to Anabaena sp. hypothetical protein Alr2015 SWALL:Q8YVG3 (EMBL:AP003587) (143 aa) fasta scores: E(): 3.7e-15, 38.93% id in 131 aa, and to Bradyrhizobium japonicum Blr7631 protein blr7631 SWALL:BAC52896 (EMBL:AP005962) (172 aa) fasta scores: E(): 3.2e-13, 43.26% id in 141 aa.
       0.697
ECA0824
Similar to Rhodospirillum rubrum pyruvate-flavodoxin oxidoreductase NifJ SWALL:NIFJ_RHORU (SWALL:Q53046) (1191 aa) fasta scores: E(): 0, 54.73% id in 1182 aa, and to Escherichia coli probable pyruvate-flavodoxin oxidoreductase ydbk or b1378 SWALL:NIFJ_ECOLI (SWALL:P52647) (1174 aa) fasta scores: E(): 0, 78.79% id in 1174 aa. Also similar to ECA2957 (47.377% id. in 1182 aa overlap).
    
  0.575
argG
Argininosuccinate synthase; Similar to Escherichia coli, and Escherichia coli O6 argininosuccinate synthase ArgG or b3172 or c3929 SWALL:ASSY_ECOLI (SWALL:P22767) (446 aa) fasta scores: E(): 1.2e-162, 91.89% id in 444 aa; Belongs to the argininosuccinate synthase family. Type 2 subfamily.
  
 
 0.552
fumA
Fumarate hydratase class I, aerobic; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
  0.535
ECA1769
Conserved hypothetical protein; Similar to Escherichia coli unknown protein from 2d-page ybdq or b0607 SWALL:UP12_ECOLI (SWALL:P39177) (142 aa) fasta scores: E(): 4e-19, 46.52% id in 144 aa, and to Shigella flexneri orf, conserved hypothetical protein ybdq or sf0526 SWALL:AAN42172 (EMBL:AE015084) (142 aa) fasta scores: E(): 4.6e-19, 46.52% id in 144 aa.
     
 0.470
gltB
Similar to Escherichia coli glutamate synthase [NADPH] large chain precursor GltB or AspB SWALL:GLTB_ECOLI (SWALL:P09831) (1517 aa) fasta scores: E(): 0, 86.75% id in 1495 aa, and to Yersinia pestis glutamate synthase, large subunit GltB SWALL:AAM83722 (EMBL:AE013613) (1535 aa) fasta scores: E(): 0, 90.25% id in 1498 aa.
     
 0.408
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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