STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1769Conserved hypothetical protein; Similar to Escherichia coli unknown protein from 2d-page ybdq or b0607 SWALL:UP12_ECOLI (SWALL:P39177) (142 aa) fasta scores: E(): 4e-19, 46.52% id in 144 aa, and to Shigella flexneri orf, conserved hypothetical protein ybdq or sf0526 SWALL:AAN42172 (EMBL:AE015084) (142 aa) fasta scores: E(): 4.6e-19, 46.52% id in 144 aa. (142 aa)    
Predicted Functional Partners:
ECA1767
Isochorismatase family protein; Similar to Lactococcus lactis hypothetical protein yvea or ll2054 SWALL:Q9CDZ6 (EMBL:AE006436) (176 aa) fasta scores: E(): 5.4e-12, 33.53% id in 167 aa, and to Clostridium acetobutylicum amidase from nicotinamidase family cac3465 SWALL:Q97DL0 (EMBL:AE007844) (178 aa) fasta scores: E(): 1.5e-09, 30.23% id in 172 aa.
  
    0.520
ECA3349
Similar to Yersinia pestis putative sigma 54 modulation protein ypo3279 SWALL:Q8ZBV5 (EMBL:AJ414156) (120 aa) fasta scores: E(): 3.7e-34, 84.95% id in 113 aa, and to Salmonella typhimurium, and Salmonella typhi ribosome associated factor, stabilizes ribosomes against dissociation yfia or stm2665 or sty2853 SWALL:Q8XEX6 (EMBL:AE008821) (112 aa) fasta scores: E(): 8.3e-31, 79.46% id in 112 aa.
  
  
 0.512
ECA1768
Similar to Bacteroides thetaiotaomicron putative acetyltransferase, bt1464 SWALL:AAO76571 (EMBL:AE016931) (152 aa) fasta scores: E(): 3.3e-31, 50.68% id in 146 aa, and to Lactococcus lactis unknown protein yuid or ll2008 SWALL:Q9CE40 (EMBL:AE006430) (152 aa) fasta scores: E(): 6.2e-31, 50.34% id in 147 aa.
     
 0.470
arcB
Similar to Escherichia coli, and Shigella flexneri aerobic respiration control sensor protein ArcB or b3210 or sf3250 SWALL:ARCB_ECOLI (SWALL:P22763) (778 aa) fasta scores: E(): 8.6e-180, 75.88% id in 788 aa, and to Yersinia pestis aerobic respiration control sensor/response regulatory protein ArcB SWALL:Q8ZB69 (EMBL:AJ414157) (778 aa) fasta scores: E(): 3.6e-190, 80.71% id in 788 aa.
     
 0.440
ECA1766
Similar to Anabaena sp. hypothetical protein Alr2015 SWALL:Q8YVG3 (EMBL:AP003587) (143 aa) fasta scores: E(): 3.7e-15, 38.93% id in 131 aa, and to Bradyrhizobium japonicum Blr7631 protein blr7631 SWALL:BAC52896 (EMBL:AP005962) (172 aa) fasta scores: E(): 3.2e-13, 43.26% id in 141 aa.
     
 0.426
hrpX
Two-component sensor kinase; Similar to Erwinia chrysanthemi HrpX SWALL:Q8KUM4 (EMBL:AF448202) (450 aa) fasta scores: E(): 3.4e-115, 68.25% id in 441 aa, and to Erwinia amylovora sensor kinase HrpX SWALL:Q9X3S8 (EMBL:AF083877) (494 aa) fasta scores: E(): 9.5e-100, 56.13% id in 481 aa.
  
 
 0.419
rpfA
Two-component sensor kinase and response regulator; Similar to Pectobacterium carotovorum subsp. carotovorum sensor/regulator protein RpfA SWALL:O08235 (EMBL:U62023) (929 aa) fasta scores: E(): 0, 92.88% id in 928 aa, and to Pectobacterium carotovorum subsp. carotovorum sensory kinase ExpS SWALL:O32556 (EMBL:Y13670) (928 aa) fasta scores: E(): 0, 95.36% id in 928 aa.
  
  
 0.418
ECA0287
Similar to Klebsiella pneumoniae probable sigma(54) modulation protein SWALL:RP5M_KLEPN (SWALL:P17161) (95 aa) fasta scores: E(): 7e-26, 76.84% id in 95 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri probable sigma (54) modulation protein Yhbh SWALL:RP5M_ECOLI (SWALL:P31221) (95 aa) fasta scores: E(): 2.4e-25, 77.89% id in 95 aa.
   
  
 0.409
ECA0705
Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa.
     
 0.403
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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