STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1781Rhodanese-like protein; Similar to Yersinia pestis hypothetical protein ypo2451/y1738 ypo2451 or y1738 SWALL:AAM85306 (EMBL:AJ414152) (373 aa) fasta scores: E(): 7.5e-115, 79.5% id in 366 aa, and to Salmonella typhimurium hypothetical protein ycea ycea or stm1156 SWALL:YCEA_SALTY (SWALL:Q8ZQ23) (350 aa) fasta scores: E(): 1e-101, 74.21% id in 349 aa; Belongs to the UPF0176 family. (382 aa)    
Predicted Functional Partners:
rluA
Similar to Escherichia coli ribosomal large subunit pseudouridine synthase A RluA or b0058 SWALL:RLUA_ECOLI (SWALL:P39219) (218 aa) fasta scores: E(): 1.5e-68, 77.88% id in 217 aa.
      0.724
ECA1780
Putative NADH-dependent flavin oxidoreductase; Similar to Xanthomonas axonopodis fmn oxidoreductase frp or xac0321 SWALL:Q8PQK2 (EMBL:AE011657) (365 aa) fasta scores: E(): 1.4e-86, 62.53% id in 363 aa, and to Ralstonia solanacearum putative NADH-dependent flavin oxidoreductase protein rsc0702 or rs01607 SWALL:Q8Y1I8 (EMBL:AL646060) (370 aa) fasta scores: E(): 1.8e-79, 56.63% id in 362 aa.
       0.532
ECA2009
Putative exported protease; Similar to Shigella flexneri orf, conserved hypothetical protein sf1619 SWALL:AAN43202 (EMBL:AE015183) (273 aa) fasta scores: E(): 1.1e-59, 57.35% id in 272 aa, and to Escherichia coli putative protease ydgd precursor ydgd or b1598 SWALL:YDGD_ECOLI (SWALL:P76176) (273 aa) fasta scores: E(): 1.8e-59, 57.35% id in 272 aa; Belongs to the peptidase S1B family.
 
     0.401
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.