STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1783Similar to Yersinia pestis putative membrane protein ypo2316 SWALL:Q8ZE67 (EMBL:AJ414152) (184 aa) fasta scores: E(): 3.6e-53, 69.94% id in 183 aa, and to Pseudomonas aeruginosa hypothetical protein Pa0422 SWALL:Q9I691 (EMBL:AE004479) (189 aa) fasta scores: E(): 8.1e-48, 62.63% id in 182 aa. (184 aa)    
Predicted Functional Partners:
ECA1782
Putative exported protein; Similar to Salmonella typhimurium, and Salmonella typhi putative secreted protein ycei or stm1157 or sty1194 SWALL:Q8XGU0 (EMBL:AE008750) (191 aa) fasta scores: E(): 1.1e-61, 82.19% id in 191 aa, and to Shigella flexneri orf, conserved hypothetical protein ycei or sf1063 SWALL:AAN42685 (EMBL:AE015134) (191 aa) fasta scores: E(): 1.1e-60, 80.1% id in 191 aa.
 
  
 0.943
cybB
Cytochrome B561; Similar to Escherichia coli, and Shigella flexneri cytochrome B561 CybB or b1418 or sf1794 SWALL:C561_ECOLI (SWALL:P08732) (176 aa) fasta scores: E(): 2.1e-34, 49.71% id in 177 aa.
  
   
 0.484
ECA2015
Putative exported protein; Similar to Xanthomonas axonopodis hypothetical protein Xac3032 SWALL:Q8PI66 (EMBL:AE011945) (220 aa) fasta scores: E(): 3.7e-08, 25.78% id in 190 aa, and to Xylella fastidiosa hypothetical protein Xf1840 SWALL:Q9PCE1 (EMBL:AE004005) (237 aa) fasta scores: E(): 6.4e-13, 29.89% id in 194 aa; Belongs to the UPF0312 family.
 
  
 0.475
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.