Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ECA1818Putative transporter; Similar to Pseudomonas putida transporter, putative pp3961 SWALL:AAN69555 (EMBL:AE016788) (402 aa) fasta scores: E(): 5.9e-107, 75.25% id in 392 aa, and to Pseudomonas aeruginosa hypothetical protein Pa2269 SWALL:Q9I1K4 (EMBL:AE004652) (401 aa) fasta scores: E(): 4.7e-74, 55.75% id in 391 aa. (402 aa)    
Predicted Functional Partners:
ECA1819
Similar to Pseudomonas putida transcriptional regulator, TetR family pp3960 SWALL:AAN69554 (EMBL:AE016788) (201 aa) fasta scores: E(): 1.5e-51, 74.35% id in 195 aa, and to Agrobacterium tumefaciens transcriptional regulator, TetR family atu4317 or agr_l_1093 SWALL:Q8U7Y2 (EMBL:AE009360) (201 aa) fasta scores: E(): 2.3e-29, 50% id in 196 aa.
 
     0.771
ECA1817
Probable transporter; Similar to Streptomyces lividans sensor protein homolog SWALL:P72472 (EMBL:U63848) (410 aa) fasta scores: E(): 9.3e-49, 42.78% id in 388 aa, and to Streptomyces coelicolor putative integral membrane transport protein sco0079 or scj11.08C SWALL:Q9RI96 (EMBL:AL939104) (407 aa) fasta scores: E(): 1.1e-48, 42.78% id in 388 aa.
 
     0.760
nfxB
Transcriptional regulator of multidrug resistance genes; Similar to Pseudomonas aeruginosa transcriptional regulatory protein NfxB or pa4600 SWALL:NFXB_PSEAE (SWALL:P32265) (187 aa) fasta scores: E(): 3.1e-14, 35.55% id in 180 aa, and to uncultured bacterium NfxB protein NfxB SWALL:Q8RSM3 (EMBL:AJ431260) (186 aa) fasta scores: E(): 9e-17, 37.5% id in 176 aa.
  
     0.492
ECA1808
Putative DNA-binding protein (pseudogene); Predicted helix-turn-helix motif with score 1004.000, SD 2.61 at aa 40-61, sequence LRREEVAALAGVGLTWYTWLEQ.
  
     0.433
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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