STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1830Similar to Methanosarcina mazei hypothetical protein Mm1422 SWALL:Q8PX00 (EMBL:AE013376) (107 aa) fasta scores: E(): 1.9e-13, 43.56% id in 101 aa, and to Fusobacterium nucleatum hypothetical cytosolic protein Fn1305 SWALL:Q8RE25 (EMBL:AE010636) (111 aa) fasta scores: E(): 6e-08, 35.92% id in 103 aa. (113 aa)    
Predicted Functional Partners:
ECA1831
Putative methyltransferase; Similar to Haemophilus influenzae hypothetical protein Hi0095 SWALL:Y095_HAEIN (SWALL:Q57060) (251 aa) fasta scores: E(): 1e-51, 54.33% id in 254 aa, and to Pasteurella multocida hypothetical protein Pm1158 SWALL:Q9CLQ7 (EMBL:AE006156) (251 aa) fasta scores: E(): 1.9e-51, 53.54% id in 254 aa.
 
     0.848
ECA1829
Putative Crp/Fnr-family of transcriptional regulator; Similar to Pseudomonas aeruginosa transcriptional activator protein Anr or pa1544 SWALL:ANR_PSEAE (SWALL:P23926) (244 aa) fasta scores: E(): 2.9e-09, 25.59% id in 211 aa, and to Pseudomonas stutzeri DnrE protein DnrE SWALL:Q9X7J7 (EMBL:AJ131716) (231 aa) fasta scores: E(): 8.4e-10, 28% id in 175 aa.
     
 0.549
ECA0705
Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa.
     
 0.447
cfa6
Similar to Pseudomonas syringae type I polyketide synthase Cfa6 SWALL:Q9Z3T9 (EMBL:AF098795) (2731 aa) fasta scores: E(): 0, 60.14% id in 2725 aa, and to Polyangium cellulosum Soraphen polyketide synthase A SorA SWALL:Q9ADL6 (EMBL:U24241) (6315 aa) fasta scores: E(): 0, 43.21% id in 2277 aa.
  
  
 0.428
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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