STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ECA1830Similar to Methanosarcina mazei hypothetical protein Mm1422 SWALL:Q8PX00 (EMBL:AE013376) (107 aa) fasta scores: E(): 1.9e-13, 43.56% id in 101 aa, and to Fusobacterium nucleatum hypothetical cytosolic protein Fn1305 SWALL:Q8RE25 (EMBL:AE010636) (111 aa) fasta scores: E(): 6e-08, 35.92% id in 103 aa. (113 aa)    
Predicted Functional Partners:
ECA1831
Putative methyltransferase; Similar to Haemophilus influenzae hypothetical protein Hi0095 SWALL:Y095_HAEIN (SWALL:Q57060) (251 aa) fasta scores: E(): 1e-51, 54.33% id in 254 aa, and to Pasteurella multocida hypothetical protein Pm1158 SWALL:Q9CLQ7 (EMBL:AE006156) (251 aa) fasta scores: E(): 1.9e-51, 53.54% id in 254 aa.
 
     0.848
ECA1829
Putative Crp/Fnr-family of transcriptional regulator; Similar to Pseudomonas aeruginosa transcriptional activator protein Anr or pa1544 SWALL:ANR_PSEAE (SWALL:P23926) (244 aa) fasta scores: E(): 2.9e-09, 25.59% id in 211 aa, and to Pseudomonas stutzeri DnrE protein DnrE SWALL:Q9X7J7 (EMBL:AJ131716) (231 aa) fasta scores: E(): 8.4e-10, 28% id in 175 aa.
     
 0.554
cobB
Putative cobalamin biosynthesis/propionate catabolism protein; Similar to Salmonella typhimurium, and Salmonella typhi CobB protein CobB or stm1221 or sty1261 SWALL:COBB_SALTY (SWALL:P97013) (273 aa) fasta scores: E(): 1.4e-80, 74.81% id in 270 aa, and to Escherichia coli CobB protein CobB or b1120 SWALL:COBB_ECOLI (SWALL:P75960) (279 aa) fasta scores: E(): 3.9e-80, 74.44% id in 270 aa; Belongs to the sirtuin family. Class III subfamily.
  
    0.425
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.