STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
btuDVitamin B12 transport ATP-binding protein; Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Responsible for energy coupling to the transport system. (250 aa)    
Predicted Functional Partners:
btuC
Vitamin B12 transport system permease; Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Involved in the translocation of the substrate across the membrane.
 
 
 0.998
btuF
Vitamin B12 transport protein; Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Binds vitamin B12 and delivers it to the periplasmic surface of BtuC.
  
 
 0.985
btuE
Putative vitamin B12 transport periplasmic protein; Non-specific peroxidase that can use thioredoxin or glutathione as a reducing agent.
  
  
 0.889
ECA1223
Similar to Yersinia pestis putative ABC transporter ATP-binding protein ypo3079 or y1100 SWALL:Q8ZCB4 (EMBL:AJ414155) (228 aa) fasta scores: E(): 1.2e-52, 81.35% id in 177 aa, and to Salmonella typhimurium, and Salmonella typhi putative ABC superfamily ybba or stm0507 or sty0553 SWALL:Q8XFS8 (EMBL:AE008719) (228 aa) fasta scores: E(): 3.2e-49, 76.27% id in 177 aa.
  
     0.657
hmuU
Similar to Yersinia pestis hemin transport system permease protein HmuU or ypo0280 or y0540 SWALL:HMUU_YERPE (SWALL:Q56992) (334 aa) fasta scores: E(): 2.2e-91, 72.34% id in 329 aa; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
  
  0.596
ECA3095
Similar to Haemophilus influenzae hypothetical ABC transporter permease protein Hi1471 SWALL:YE71_HAEIN (SWALL:Q57130) (337 aa) fasta scores: E(): 3e-65, 53.86% id in 336 aa, and to Pasteurella multocida hypothetical protein Pm1148 SWALL:Q9CLR3 (EMBL:AE006155) (340 aa) fasta scores: E(): 7.2e-70, 57.44% id in 329 aa; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
  
  0.545
ECA4256
Putative iron(III) ABC transporter permease protein; Similar to Bordetella avium BhuU bhuU SWALL:Q8L1U4 (EMBL:AY095952) (334 aa) fasta scores: E(): 1.1e-33, 38.8% id in 317 aa, and to Rhizobium loti ABC transporter, permease protein mlr8229 SWALL:Q983Q1 (EMBL:AP003013) (349 aa) fasta scores: E(): 1.3e-61, 54.4% id in 329 aa; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
  
  0.538
ECA3242
ABC transporter permease (FecCD-family); Similar to Yersinia pestis putative feccd-family membrane transport protein ypo1311 or yiub or y2874 SWALL:Q8ZGI6 (EMBL:AJ414147) (360 aa) fasta scores: E(): 2.2e-108, 81.66% id in 360 aa, and to Salmonella typhimurium putative ABC transport protein stm0770 SWALL:Q8ZQS4 (EMBL:AE008731) (359 aa) fasta scores: E(): 2.2e-94, 72.06% id in 358 aa; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
  
  0.531
fecC
iron(III) dicitrate transport system permease protein; Similar to Escherichia coli iron FecC or b4289 SWALL:FECC_ECOLI (SWALL:P15030) (332 aa) fasta scores: E(): 2.5e-94, 74.09% id in 332 aa, and to Shigella flexneri 2a FecC SWALL:Q93F20 (EMBL:AF326777) (325 aa) fasta scores: E(): 2.3e-93, 75.46% id in 322 aa; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
  
  0.516
fecD
iron(III) dicitrate transport system permease protein; Similar to Escherichia coli iron FecD or b4288 SWALL:FECD_ECOLI (SWALL:P15029) (318 aa) fasta scores: E(): 1.6e-85, 69.3% id in 316 aa, and to Shigella flexneri 2a FecD SWALL:Q93F21 (EMBL:AF326777) (318 aa) fasta scores: E(): 2.1e-85, 69.3% id in 316 aa; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
  
  0.513
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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