STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hmuTSimilar to Yersinia pestis hemin-binding periplasmic protein HmuT precursor HmuT or ypo0281 or y0541 SWALL:HMUT_YERPE (SWALL:Q56991) (279 aa) fasta scores: E(): 2.7e-57, 60.66% id in 272 aa. (272 aa)    
Predicted Functional Partners:
hmuV
Hemin transport system ATP-binding protein; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.
 
 0.999
hemS
Hemin transport protein; Similar to Yersinia enterocolitica hemin transport protein HemS SWALL:HEMS_YEREN (SWALL:P31517) (345 aa) fasta scores: E(): 2.2e-92, 65.33% id in 349 aa.
 
  
 0.996
hmuU
Similar to Yersinia pestis hemin transport system permease protein HmuU or ypo0280 or y0540 SWALL:HMUU_YERPE (SWALL:Q56992) (334 aa) fasta scores: E(): 2.2e-91, 72.34% id in 329 aa; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.977
ECA4256
Putative iron(III) ABC transporter permease protein; Similar to Bordetella avium BhuU bhuU SWALL:Q8L1U4 (EMBL:AY095952) (334 aa) fasta scores: E(): 1.1e-33, 38.8% id in 317 aa, and to Rhizobium loti ABC transporter, permease protein mlr8229 SWALL:Q983Q1 (EMBL:AP003013) (349 aa) fasta scores: E(): 1.3e-61, 54.4% id in 329 aa; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.871
ECA3095
Similar to Haemophilus influenzae hypothetical ABC transporter permease protein Hi1471 SWALL:YE71_HAEIN (SWALL:Q57130) (337 aa) fasta scores: E(): 3e-65, 53.86% id in 336 aa, and to Pasteurella multocida hypothetical protein Pm1148 SWALL:Q9CLR3 (EMBL:AE006155) (340 aa) fasta scores: E(): 7.2e-70, 57.44% id in 329 aa; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.865
fecD
iron(III) dicitrate transport system permease protein; Similar to Escherichia coli iron FecD or b4288 SWALL:FECD_ECOLI (SWALL:P15029) (318 aa) fasta scores: E(): 1.6e-85, 69.3% id in 316 aa, and to Shigella flexneri 2a FecD SWALL:Q93F21 (EMBL:AF326777) (318 aa) fasta scores: E(): 2.1e-85, 69.3% id in 316 aa; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.830
fecC
iron(III) dicitrate transport system permease protein; Similar to Escherichia coli iron FecC or b4289 SWALL:FECC_ECOLI (SWALL:P15030) (332 aa) fasta scores: E(): 2.5e-94, 74.09% id in 332 aa, and to Shigella flexneri 2a FecC SWALL:Q93F20 (EMBL:AF326777) (325 aa) fasta scores: E(): 2.3e-93, 75.46% id in 322 aa; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.816
cbrB
Similar to Erwinia chrysanthemi achromobactin transport system permease protein CbrB SWALL:CBRB_ERWCH (SWALL:Q47085) (340 aa) fasta scores: E(): 8.6e-66, 58.15% id in 325 aa.
 
 
 0.810
ECA3242
ABC transporter permease (FecCD-family); Similar to Yersinia pestis putative feccd-family membrane transport protein ypo1311 or yiub or y2874 SWALL:Q8ZGI6 (EMBL:AJ414147) (360 aa) fasta scores: E(): 2.2e-108, 81.66% id in 360 aa, and to Salmonella typhimurium putative ABC transport protein stm0770 SWALL:Q8ZQS4 (EMBL:AE008731) (359 aa) fasta scores: E(): 2.2e-94, 72.06% id in 358 aa; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.810
hasR
TonB-dependent heme receptor; Similar to Serratia marcescens HasR protein SWALL:P72473 (EMBL:Y08983) (899 aa) fasta scores: E(): 2.1e-176, 62.03% id in 893 aa, and to Yersinia pestis putative TonB dependent receptor protein ypo3923 or hasr or y0313 SWALL:Q8ZA89 (EMBL:AJ414159) (830 aa) fasta scores: E(): 1.5e-86, 52.03% id in 786 aa.
 
  
 0.795
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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