STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1849GntR-family transcriptional regulator; Similar to Escherichia coli fatty acyl responsive regulator farr or g30 or b0730 SWALL:FARR_ECOLI (SWALL:P13669) (240 aa) fasta scores: E(): 6e-25, 33.19% id in 235 aa, and to Shigella flexneri putative transcriptional regulator yidp or sf3779 SWALL:AAN45221 (EMBL:AE015385) (224 aa) fasta scores: E(): 1.8e-45, 54.01% id in 224 aa. (248 aa)    
Predicted Functional Partners:
nadR
Similar to Salmonella typhimurium transcriptional regulator NadR SWALL:NADR_SALTY (SWALL:P24518) (410 aa) fasta scores: E(): 1.1e-140, 85.5% id in 407 aa, and to Escherichia coli transcriptional regulator NadR or NadI or b4390 SWALL:NADR_ECOLI (SWALL:P27278) (410 aa) fasta scores: E(): 2.2e-139, 83.9% id in 410 aa.
   
  
 0.646
aglB
6-phospho-alpha-glucosidase; Similar to Klebsiella pneumoniae 6-phospho-alpha-glucosidase AglB SWALL:AGLB_KLEPN (SWALL:Q9AGA6) (440 aa) fasta scores: E(): 1.4e-152, 82.95% id in 440 aa.
 
     0.632
aglA
Similar to Klebsiella pneumoniae PTS system, alpha-glucoside-specific IIBC component AglA SWALL:PTAB_KLEPN (SWALL:Q9AGA7) (540 aa) fasta scores: E(): 6.7e-142, 69.04% id in 533 aa.
 
  
 0.576
ECA2487
LacI-family transcriptional regulator; Similar to Haemophilus influenzae galactose operon repressor GalR or GalS or hi0821 SWALL:GALR_HAEIN (SWALL:P31766) (332 aa) fasta scores: E(): 5.7e-09, 31.02% id in 303 aa, and to Staphylococcus xylosus probable catabolite control protein A CcpA SWALL:CCPA_STAXY (SWALL:Q56194) (329 aa) fasta scores: E(): 2.5e-08, 26.36% id in 311 aa.
  
     0.470
ECA0853
LacI-family transcriptional regulator; Similar to Escherichia coli ebg operon repressor EbgR or b3075 SWALL:EBGR_ECOLI (SWALL:P06846) (327 aa) fasta scores: E(): 3.5e-19, 32.71% id in 321 aa, and to Streptococcus thermophilus galactose operon repressor GalR SWALL:GALR_STRTR (SWALL:Q9ZB11) (331 aa) fasta scores: E(): 1.3e-12, 31.42% id in 350 aa.
  
     0.449
ascG
Asc operon repressor; Similar to Escherichia coli cryptic asc operon repressor AscG or b2714 SWALL:ASCG_ECOLI (SWALL:P24242) (336 aa) fasta scores: E(): 7.3e-78, 64.34% id in 331 aa.
  
     0.439
scrR
Sucrose operon repressor; Similar to Erwinia amylovora repressor scrR SWALL:Q9F497 (EMBL:AJ250722) (342 aa) fasta scores: E(): 4.7e-86, 65.46% id in 333 aa, and to Klebsiella pneumoniae sucrose operon repressor scrR SWALL:SCRR_KLEPN (SWALL:P37076) (334 aa) fasta scores: E(): 5.5e-88, 65.07% id in 335 aa.
  
     0.432
ECA2456
Probable transcriptional regulator (partial); Partial CDS. Similar to the C-terminal regions of many including Pseudomonas aeruginosa probable transcriptional regulator pa2488 SWALL:Q9I0Z4 (EMBL:AE004676) (254 aa) fasta scores: E(): 0.0017, 50% id in 42 aa, and to Vibrio vulnificus arac-type DNA-binding domain-containing protein vv20956 SWALL:AAO07868 (EMBL:AE016811) (259 aa) fasta scores: E(): 0.0035, 48.78% id in 41 aa.
  
  
 0.424
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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