STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1868Conserved protein; Weakly similar to Salmonella typhimurium putative cytoplasmic protein stm4422 SWALL:Q8ZK60 (EMBL:AE008907) (100 aa) fasta scores: E(): 8.7, 26.47% id in 68 aa, and to Pyrobaculum aerophilum ribosomal protein l24 pae3345 SWALL:Q8ZTA6 (EMBL:AE009925) (58 aa) fasta scores: E(): 9.4, 29.68% id in 64 aa. (78 aa)    
Predicted Functional Partners:
arbG
Similar to Erwinia chrysanthemi beta-glucoside operon antiterminator ArbG SWALL:ARBG_ERWCH (SWALL:P26211) (283 aa) fasta scores: E(): 1.8e-83, 76.07% id in 280 aa, and to Escherichia coli cryptic beta-glucoside bgl operon antiterminator BglG or BglC or b3723 SWALL:BGLG_ECOLI (SWALL:P11989) (278 aa) fasta scores: E(): 6.2e-56, 53.26% id in 276 aa. Also similar to ECA1452 (45.600% id. in 250 aa overlap), and to ECA4389 (46.400% id. in 274 aa overlap), and to ECA0858 (38.000% id. in 272 aa overlap).
       0.527
pykF
Pyruvate kinase; Similar to Escherichia coli, and Escherichia coli O157:H7 pyruvate kinase I PykF or b1676 or z2704 or ecs2383 SWALL:KPY1_ECOLI (SWALL:P14178) (470 aa) fasta scores: E(): 4.4e-139, 84.68% id in 470 aa.
       0.416
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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