STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nrfDNitrite reductase complex component; Similar to Escherichia coli NrfD protein NrfD or b4073 SWALL:NRFD_ECOLI (SWALL:P32709) (318 aa) fasta scores: E(): 2.2e-95, 73.56% id in 314 aa. Also similar to ECA0913 (50.784% id. in 319 aa overlap). (320 aa)    
Predicted Functional Partners:
nrfB
Cytochrome C-type protein; Similar to Escherichia coli, and Escherichia coli O6 cytochrome C-type protein NrfB precursor NrfB or b4071 or c5067 SWALL:NRFB_ECOLI (SWALL:P32707) (188 aa) fasta scores: E(): 9e-56, 74.21% id in 190 aa.
 
  
 0.980
nrfA
Cytochrome c552 precursor; Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process; Belongs to the cytochrome c-552 family.
 
  
 0.963
nrfC
Nitrite reductase complex component; Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri NrfC protein precursor NrfC or b4072 or z5671 or ecs5054 or sf4132 SWALL:NRFC_ECOLI (SWALL:P32708) (223 aa) fasta scores: E(): 8.4e-76, 83.4% id in 223 aa. Also similar to ECA0914 (56.444% id. in 225 aa overlap).
 
 
 0.957
nrfG
Similar to Escherichia coli formate-dependent nitrite reductase complex NrfG subunit NrfG or b4076 SWALL:NRFG_ECOLI (SWALL:P32712) (198 aa) fasta scores: E(): 3.6e-35, 55.78% id in 190 aa.
 
  
 0.943
nrfF
Formate-dependent nitrite reductase complex subunit; Possible subunit of a heme lyase.
 
  
 0.879
nrfE
Similar to Escherichia coli cytochrome C-type biogenesis protein NrfE or b4074 SWALL:NRFE_ECOLI (SWALL:P32710) (552 aa) fasta scores: E(): 4.4e-94, 57.73% id in 601 aa.
 
  
 0.874
napG
Ferredoxin-type protein; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri ferredoxin-type protein NapG or b2205 or c2744 or sf2289 SWALL:NAPG_ECOLI (SWALL:P33936) (231 aa) fasta scores: E(): 2.3e-68, 75.65% id in 230 aa.
 
 
 0.773
napH
Similar to Escherichia coli ferredoxin-type protein NapH or b2204 SWALL:NAPH_ECOLI (SWALL:P33934) (287 aa) fasta scores: E(): 7.7e-90, 75.61% id in 287 aa.
  
  
 0.763
ECA0914
Putative component of polysulfide reductase; Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri NrfC protein precursor nrfc or b4072 or z5671 or ecs5054 or sf4132 SWALL:NRFC_ECOLI (SWALL:P32708) (223 aa) fasta scores: E(): 7.3e-49, 58.66% id in 225 aa. Also similar to ECA1877 (56.444% id. in 225 aa overlap).
 
 
 0.719
napD
NapAB assembly protein; Chaperone for NapA, the catalytic subunit of the periplasmic nitrate reductase. It binds directly and specifically to the twin- arginine signal peptide of NapA, preventing premature interaction with the Tat translocase and premature export.
  
   
 0.717
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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