STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
napCCytochrome C-type protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 cytochrome C-type protein NapC or b2202 or c2739 or z3459 or ecs3091 SWALL:NAPC_ECOLI (SWALL:P33932) (200 aa) fasta scores: E(): 3.2e-61, 73.36% id in 199 aa. (204 aa)    
Predicted Functional Partners:
napB
Diheme cytochrome C protein; Electron transfer subunit of the periplasmic nitrate reductase complex NapAB; Belongs to the NapB family.
 
  
 0.994
napA
Periplasmic nitrate reductase; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite.
 
 
 0.989
napH
Similar to Escherichia coli ferredoxin-type protein NapH or b2204 SWALL:NAPH_ECOLI (SWALL:P33934) (287 aa) fasta scores: E(): 7.7e-90, 75.61% id in 287 aa.
 
 
 0.984
napF
Ferredoxin-type protein; Could be involved in the maturation of NapA, the catalytic subunit of the periplasmic nitrate reductase, before its export into the periplasm; Belongs to the NapF family.
 
  
 0.981
napD
NapAB assembly protein; Chaperone for NapA, the catalytic subunit of the periplasmic nitrate reductase. It binds directly and specifically to the twin- arginine signal peptide of NapA, preventing premature interaction with the Tat translocase and premature export.
 
  
 0.971
napG
Ferredoxin-type protein; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri ferredoxin-type protein NapG or b2205 or c2744 or sf2289 SWALL:NAPG_ECOLI (SWALL:P33936) (231 aa) fasta scores: E(): 2.3e-68, 75.65% id in 230 aa.
 
  
 0.965
nrfA
Cytochrome c552 precursor; Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process; Belongs to the cytochrome c-552 family.
 
 
 0.868
ECA1009
Similar to Rhodobacter sphaeroides biotin sulfoxide reductase SWALL:BISC_RHOSH (SWALL:P54934) (744 aa) fasta scores: E(): 6.3e-130, 48.13% id in 725 aa, and to Escherichia coli biotin sulfoxide reductase bisc or b3551 SWALL:BISC_ECOLI (SWALL:P20099) (777 aa) fasta scores: E(): 8.5e-72, 39.01% id in 751 aa; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.863
nrfB
Cytochrome C-type protein; Similar to Escherichia coli, and Escherichia coli O6 cytochrome C-type protein NrfB precursor NrfB or b4071 or c5067 SWALL:NRFB_ECOLI (SWALL:P32707) (188 aa) fasta scores: E(): 9e-56, 74.21% id in 190 aa.
 
 
 0.804
fdnG
Similar to Escherichia coli formate dehydrogenase, nitrate-inducible, major subunit FdnG or b1474 SWALL:FDNG_ECOLI (SWALL:P24183) (1015 aa) fasta scores: E(): 0, 69.75% id in 1015 aa.
  
 
 0.651
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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