STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
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[Homology]
Score
napGFerredoxin-type protein; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri ferredoxin-type protein NapG or b2205 or c2744 or sf2289 SWALL:NAPG_ECOLI (SWALL:P33936) (231 aa) fasta scores: E(): 2.3e-68, 75.65% id in 230 aa. (230 aa)    
Predicted Functional Partners:
napH
Similar to Escherichia coli ferredoxin-type protein NapH or b2204 SWALL:NAPH_ECOLI (SWALL:P33934) (287 aa) fasta scores: E(): 7.7e-90, 75.61% id in 287 aa.
  
 0.998
napB
Diheme cytochrome C protein; Electron transfer subunit of the periplasmic nitrate reductase complex NapAB; Belongs to the NapB family.
 
  
 0.992
napA
Periplasmic nitrate reductase; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite.
 
 0.986
ECA0824
Similar to Rhodospirillum rubrum pyruvate-flavodoxin oxidoreductase NifJ SWALL:NIFJ_RHORU (SWALL:Q53046) (1191 aa) fasta scores: E(): 0, 54.73% id in 1182 aa, and to Escherichia coli probable pyruvate-flavodoxin oxidoreductase ydbk or b1378 SWALL:NIFJ_ECOLI (SWALL:P52647) (1174 aa) fasta scores: E(): 0, 78.79% id in 1174 aa. Also similar to ECA2957 (47.377% id. in 1182 aa overlap).
  
 
 0.979
napD
NapAB assembly protein; Chaperone for NapA, the catalytic subunit of the periplasmic nitrate reductase. It binds directly and specifically to the twin- arginine signal peptide of NapA, preventing premature interaction with the Tat translocase and premature export.
 
  
 0.976
napF
Ferredoxin-type protein; Could be involved in the maturation of NapA, the catalytic subunit of the periplasmic nitrate reductase, before its export into the periplasm; Belongs to the NapF family.
 
 
 0.967
napC
Cytochrome C-type protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 cytochrome C-type protein NapC or b2202 or c2739 or z3459 or ecs3091 SWALL:NAPC_ECOLI (SWALL:P33932) (200 aa) fasta scores: E(): 3.2e-61, 73.36% id in 199 aa.
 
 
 0.966
hybB
Similar to Escherichia coli probable Ni/Fe-hydrogenase 2 B-type cytochrome subunit hybb or b2995 SWALL:HYBB_ECOLI (SWALL:P37180) (392 aa) fasta scores: E(): 8.4e-123, 73.69% id in 384 aa.
 
 0.878
nrfD
Nitrite reductase complex component; Similar to Escherichia coli NrfD protein NrfD or b4073 SWALL:NRFD_ECOLI (SWALL:P32709) (318 aa) fasta scores: E(): 2.2e-95, 73.56% id in 314 aa. Also similar to ECA0913 (50.784% id. in 319 aa overlap).
 
 
 0.773
ECA0913
Putative component of polysulfide reductase; Similar to Escherichia coli NfrD protein NrfD or b4073 SWALL:NRFD_ECOLI (SWALL:P32709) (318 aa) fasta scores: E(): 1.4e-56, 50.62% id in 322 aa. Also similar to ECA1878 (50.784% id. in 319 aa overlap).
 
 
 0.762
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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