STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
narQSimilar to Escherichia coli nitrate/nitrite sensor protein NarQ or b2469 SWALL:NARQ_ECOLI (SWALL:P27896) (566 aa) fasta scores: E(): 3.6e-131, 64.45% id in 557 aa. (573 aa)    
Predicted Functional Partners:
narP
Similar to Escherichia coli nitrate/nitrite response regulator protein NarP or b2193 SWALL:NARP_ECOLI (SWALL:P31802) (215 aa) fasta scores: E(): 3e-46, 65.72% id in 213 aa.
 
 0.995
narL
Nitrate/nitrite response regulator; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri nitrate/nitrite response regulator protein NarL or FrdR or b1221 or c1681 or z1996 or ecs1726 or sf1224 SWALL:NARL_ECOLI (SWALL:P10957) (216 aa) fasta scores: E(): 2.2e-60, 80.46% id in 215 aa.
 
 0.990
napD
NapAB assembly protein; Chaperone for NapA, the catalytic subunit of the periplasmic nitrate reductase. It binds directly and specifically to the twin- arginine signal peptide of NapA, preventing premature interaction with the Tat translocase and premature export.
 
     0.804
ECA1899
Hypothetical protein; No significant database matches.
       0.773
napH
Similar to Escherichia coli ferredoxin-type protein NapH or b2204 SWALL:NAPH_ECOLI (SWALL:P33934) (287 aa) fasta scores: E(): 7.7e-90, 75.61% id in 287 aa.
 
     0.750
uhpA
Two-component system response regulator protein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri transcriptional regulatory protein UhpA or b3669 or c4593 or z5159 or ecs4606 or sf3792 SWALL:UHPA_ECOLI (SWALL:P10940) (196 aa) fasta scores: E(): 1.2e-29, 48.98% id in 196 aa.
 
 
 0.721
napG
Ferredoxin-type protein; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri ferredoxin-type protein NapG or b2205 or c2744 or sf2289 SWALL:NAPG_ECOLI (SWALL:P33936) (231 aa) fasta scores: E(): 2.3e-68, 75.65% id in 230 aa.
 
     0.695
napF
Ferredoxin-type protein; Could be involved in the maturation of NapA, the catalytic subunit of the periplasmic nitrate reductase, before its export into the periplasm; Belongs to the NapF family.
 
   
 0.692
napB
Diheme cytochrome C protein; Electron transfer subunit of the periplasmic nitrate reductase complex NapAB; Belongs to the NapB family.
 
     0.689
hrpY
Two-component response regulator; Similar to Erwinia chrysanthemi HrpY SWALL:Q8KUM3 (EMBL:AF448202) (213 aa) fasta scores: E(): 6.8e-57, 75.94% id in 212 aa, and to Erwinia amylovora response regulator HrpY SWALL:Q9X3S9 (EMBL:AF083877) (213 aa) fasta scores: E(): 1.3e-51, 69.34% id in 212 aa.
 
 
 0.683
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.