STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1902Similar to Pseudomonas aeruginosa probable transcriptional regulator pa2917 SWALL:Q9HZT0 (EMBL:AE004718) (278 aa) fasta scores: E(): 1.8e-23, 31.85% id in 270 aa, and to Vibrio vulnificus arac-type DNA-binding domain-containing protein vv20572 SWALL:Q8D6G1 (EMBL:AE016810) (276 aa) fasta scores: E(): 4.4e-21, 30.65% id in 274 aa. (281 aa)    
Predicted Functional Partners:
ECA1903
Putative membrane protein; Similar to Mycobacterium tuberculosis putative two-domain membrane protein rv3728 or mt3831 or mtv025.076 SWALL:O69695 (EMBL:AL022121) (1071 aa) fasta scores: E(): 1.6e-42, 38.68% id in 455 aa, and to Streptomyces coelicolor putative integral membrane efflux protein sco6553 or sc4b5.03C SWALL:Q9ZBW5 (EMBL:AL939128) (504 aa) fasta scores: E(): 1.1e-33, 35.12% id in 410 aa.
       0.618
ECA3783
Similar to Salmonella typhi AraC-family transcriptional regulator sty0395 SWALL:Q8Z909 (EMBL:AL627266) (334 aa) fasta scores: E(): 7.3e-15, 27.68% id in 307 aa, and to Brucella suis transcriptional regulator, AraC family bra1192 SWALL:AAN34350 (EMBL:AE014611) (259 aa) fasta scores: E(): 6.2e-14, 26.33% id in 243 aa.
  
     0.600
ECA1545
Similar to Neisseria meningitidis putative AraC-family transcriptional regulator nma0578 SWALL:Q9JW23 (EMBL:AL162753) (318 aa) fasta scores: E(): 2.2e-06, 26.26% id in 316 aa, and to Pseudomonas stutzeri putative transcriptional activator pdtorfC SWALL:Q9L8R1 (EMBL:AF196567) (235 aa) fasta scores: E(): 2e-15, 35.65% id in 230 aa.
  
     0.565
rhaR
L-rhamnose operon transcriptional activator; Activates expression of the rhaSR operon in response to L- rhamnose.
  
     0.503
ECA1478
AraC-family transcriptional regulator; Similar to Ralstonia solanacearum probable transcription regulator protein rsc2598 or rs00846 SWALL:Q8XW77 (EMBL:AL646070) (299 aa) fasta scores: E(): 7.9e-85, 74.4% id in 293 aa, and to Rhizobium loti probable transcriptional regulator mlr2197 SWALL:Q98IX9 (EMBL:AP002999) (298 aa) fasta scores: E(): 3.3e-49, 48.92% id in 280 aa.
  
     0.495
rob
Right origin-binding protein; Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri right origin-binding protein Rob or b4396 or z5999 or ecs5354 or sf4428 SWALL:ROB_ECOLI (SWALL:P27292) (289 aa) fasta scores: E(): 5e-81, 67.01% id in 288 aa.
  
     0.495
rhaS
L-rhamnose operon regulatory protein; Activates expression of the rhaBAD and rhaT operons.
  
     0.491
ECA0352
Similar to Yersinia pestis AraC-family regulatory protein ypo0679 SWALL:AAM87046 (EMBL:AJ414144) (297 aa) fasta scores: E(): 3.2e-77, 66.21% id in 296 aa, and to Escherichia coli hypothetical transcriptional regulator YqhC SWALL:YQHC_ECOLI (SWALL:Q46855) (318 aa) fasta scores: E(): 1.2e-66, 57.77% id in 296 aa.
  
     0.461
ECA0973
Similar to Agrobacterium tumefaciens transcriptional regulator, AraC family atu0248 or agr_c_425 SWALL:Q8UIP5 (EMBL:AE008997) (365 aa) fasta scores: E(): 3.7e-23, 33.14% id in 353 aa, and to Vibrio cholerae transcriptional regulator, arac/xyls family vca0926 SWALL:Q9KL23 (EMBL:AE004420) (365 aa) fasta scores: E(): 3.5e-16, 33.69% id in 368 aa.
  
     0.448
narP
Similar to Escherichia coli nitrate/nitrite response regulator protein NarP or b2193 SWALL:NARP_ECOLI (SWALL:P31802) (215 aa) fasta scores: E(): 3e-46, 65.72% id in 213 aa.
  
    0.410
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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