STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1903Putative membrane protein; Similar to Mycobacterium tuberculosis putative two-domain membrane protein rv3728 or mt3831 or mtv025.076 SWALL:O69695 (EMBL:AL022121) (1071 aa) fasta scores: E(): 1.6e-42, 38.68% id in 455 aa, and to Streptomyces coelicolor putative integral membrane efflux protein sco6553 or sc4b5.03C SWALL:Q9ZBW5 (EMBL:AL939128) (504 aa) fasta scores: E(): 1.1e-33, 35.12% id in 410 aa. (455 aa)    
Predicted Functional Partners:
ECA1902
Similar to Pseudomonas aeruginosa probable transcriptional regulator pa2917 SWALL:Q9HZT0 (EMBL:AE004718) (278 aa) fasta scores: E(): 1.8e-23, 31.85% id in 270 aa, and to Vibrio vulnificus arac-type DNA-binding domain-containing protein vv20572 SWALL:Q8D6G1 (EMBL:AE016810) (276 aa) fasta scores: E(): 4.4e-21, 30.65% id in 274 aa.
       0.618
ECA0705
Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa.
  
  
 0.474
ECA2350
Probable transport protein; Similar to Yersinia pestis putative multidrug resistance protein ypo2148 or y2173 SWALL:Q8ZEL6 (EMBL:AJ414151) (400 aa) fasta scores: E(): 3.6e-100, 68.58% id in 382 aa, and to Shewanella oneidensis drug resistance transporter, bcr/cfla family protein so4555 SWALL:AAN57516 (EMBL:AE015887) (402 aa) fasta scores: E(): 1.4e-52, 42.3% id in 390 aa.
  
     0.454
cfa6
Similar to Pseudomonas syringae type I polyketide synthase Cfa6 SWALL:Q9Z3T9 (EMBL:AF098795) (2731 aa) fasta scores: E(): 0, 60.14% id in 2725 aa, and to Polyangium cellulosum Soraphen polyketide synthase A SorA SWALL:Q9ADL6 (EMBL:U24241) (6315 aa) fasta scores: E(): 0, 43.21% id in 2277 aa.
     
 0.410
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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