STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1906Putative hydrolase; Similar to Clostridium perfringens hypothetical protein Cpe0723 cpe0723 SWALL:Q8XMG6 (EMBL:AP003187) (262 aa) fasta scores: E(): 2.4e-24, 33.07% id in 260 aa, and to Vibrio vulnificus predicted hydrolase of the had superfamily vv21429 SWALL:AAO08308 (EMBL:AE016813) (267 aa) fasta scores: E(): 2.1e-23, 31.67% id in 262 aa. (263 aa)    
Predicted Functional Partners:
ECA2224
Putative transporter; Similar to Salmonella typhimurium putative transport protein stm0868 SWALL:Q8ZQK6 (EMBL:AE008736) (403 aa) fasta scores: E(): 1.8e-64, 46.83% id in 395 aa, and to Escherichia coli hypothetical protein ybjj ybjj or b0845 SWALL:YBJJ_ECOLI (SWALL:P75810) (402 aa) fasta scores: E(): 9.3e-64, 46.26% id in 402 aa.
 
  
 0.482
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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