STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1908Putative membrane-attached phosphoesterase; Similar to Rhodococcus fascians putative integral membrane protein SWALL:CAD52983 (EMBL:AJ301559) (379 aa) fasta scores: E(): 2.4e-32, 35.1% id in 376 aa, and to Leptospira interrogans predicted DNA repair exonuclease la3166 SWALL:AAN50364 (EMBL:AE011479) (280 aa) fasta scores: E(): 1.5e-31, 40.22% id in 271 aa. (376 aa)    
Predicted Functional Partners:
ECA1907
DeoR-family transcriptional regulator; Similar to Rhizobium meliloti putative transcription regulator protein r03273 or smc03890 SWALL:Q92L17 (EMBL:AL591793) (260 aa) fasta scores: E(): 1.2e-30, 37.5% id in 248 aa, and to Agrobacterium tumefaciens transcriptional regulator, DeoR family atu2725 or agr_c_4939 SWALL:Q8UBX4 (EMBL:AE009218) (266 aa) fasta scores: E(): 1.2e-30, 39.67% id in 247 aa.
       0.442
ECA3295
Putative membrane protein; Similar to Chlorobium tepidum hypothetical protein Ct0748 SWALL:Q8KEE1 (EMBL:AE012845) (133 aa) fasta scores: E(): 1.8e-18, 48% id in 125 aa, and to Nitrosomonas europaea hypothetical protein ne1276 SWALL:CAD85187 (EMBL:BX321860) (134 aa) fasta scores: E(): 1.9e-16, 43.54% id in 124 aa.
  
     0.411
katB
Catalase-peroxidase; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.
       0.401
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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