STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1914Similar to Caulobacter crescentus ABC transporter, ATP-binding protein cc1831 SWALL:Q9A795 (EMBL:AE005857) (253 aa) fasta scores: E(): 1e-52, 57.74% id in 239 aa, and to Synechocystis sp. nitrate transport protein NrtD or slr0044 SWALL:Q55463 (EMBL:D64006) (282 aa) fasta scores: E(): 2.7e-29, 39.59% id in 245 aa. (263 aa)    
Predicted Functional Partners:
ECA1913
ABC transporter, permease protein; Similar to Escherichia coli taurine transport system permease protein TauC or SsiC or b0367 SWALL:TAUC_ECOLI (SWALL:Q47539) (275 aa) fasta scores: E(): 1.8e-22, 35.07% id in 268 aa, and to Caulobacter crescentus ABC transporter, permease protein cc1832 SWALL:Q9A794 (EMBL:AE005857) (271 aa) fasta scores: E(): 1.8e-50, 53% id in 266 aa.
 
     0.948
ECA1915
Similar to Caulobacter crescentus hypothetical protein Cc1827 SWALL:Q9A799 (EMBL:AE005857) (279 aa) fasta scores: E(): 4.8e-22, 37.88% id in 227 aa, and to Corynebacterium efficiens conserved hypothetical protein ce0715 SWALL:BAC17525 (EMBL:AP005216) (292 aa) fasta scores: E(): 2e-16, 33.47% id in 227 aa.
 
     0.943
ECA1912
Putative ABC transporter, periplasmic protein; Similar to Escherichia coli taurine-binding periplasmic protein precursor TauA or SsiA or b0365 SWALL:TAUA_ECOLI (SWALL:Q47537) (320 aa) fasta scores: E(): 9.5e-05, 22.56% id in 226 aa, and to Caulobacter crescentus ABC transporter, periplasmic substrate-binding protein cc1833 SWALL:Q9A793 (EMBL:AE005857) (369 aa) fasta scores: E(): 3.6e-67, 55.78% id in 337 aa, and to Synechocystis sp. hypothetical protein Sll1080 SWALL:P73267 (EMBL:D90905) (352 aa) fasta scores: E(): 1.5e-19, 28.97% id in 283 aa.
 
   
 0.937
ECA1916
Similar to Caulobacter crescentus hypothetical protein Cc1828 SWALL:Q9A798 (EMBL:AE005857) (208 aa) fasta scores: E(): 7.8e-41, 53.03% id in 198 aa, and to Corynebacterium efficiens conserved hypothetical protein ce0714 SWALL:BAC17524 (EMBL:AP005216) (238 aa) fasta scores: E(): 1.6e-32, 43.78% id in 201 aa.
 
     0.936
ECA1917
Putative allophanate hydrolase; Similar to the C-terminal region of Saccharomyces cerevisiae urea amidolyase [includes: urea carboxylase and allophanate hydrolase Dur1,2 or ybr208c or ybr1448 SWALL:DUR1_YEAST (SWALL:P32528) (1835 aa) fasta scores: E(): 3.6e-203, 44.47% id in 1212 aa, and to Caulobacter crescentus urea amidolyase-related protein cc1829 SWALL:Q9A797 (EMBL:AE005857) (1207 aa) fasta scores: E(): 0, 56.38% id in 1206 aa.
 
   
 0.832
ECA2141
Probable amidase; Similar to Pseudomonas putida amidase SWALL:AMID_PSEPU (SWALL:O69768) (466 aa) fasta scores: E(): 2.4e-24, 31.03% id in 435 aa, and to the N-terminal region of Saccharomyces cerevisiae urea amidolyase [includes: urea carboxylase and allophanate hydrolase] Dur1,2 or ybr208c or ybr1448 SWALL:DUR1_YEAST (SWALL:P32528) (1835 aa) fasta scores: E(): 2.9e-65, 43.25% id in 608 aa.
 
     0.740
ECA2142
Urea amidolyase; Similar to the C-terminal region of Saccharomyces cerevisiae urea amidolyase [includes: urea carboxylase and allophanate hydrolase] Dur1,2 or ybr208c or ybr1448 SWALL:DUR1_YEAST (SWALL:P32528) (1835 aa) fasta scores: E(): 0, 52.92% id in 1213 aa, and to Pseudomonas fluorescens urea amidolyase homologue uahA SWALL:Q9XAV3 (EMBL:AJ243652) (1213 aa) fasta scores: E(): 0, 51.47% id in 1224 aa.
  
   
 0.673
cfa6
Similar to Pseudomonas syringae type I polyketide synthase Cfa6 SWALL:Q9Z3T9 (EMBL:AF098795) (2731 aa) fasta scores: E(): 0, 60.14% id in 2725 aa, and to Polyangium cellulosum Soraphen polyketide synthase A SorA SWALL:Q9ADL6 (EMBL:U24241) (6315 aa) fasta scores: E(): 0, 43.21% id in 2277 aa.
  
 
 0.464
ECA0705
Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa.
  
  
 0.440
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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