STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1918Similar to Shigella flexneri orf, conserved hypothetical protein ykgg or sf0258 SWALL:AAN41918 (EMBL:AE015061) (231 aa) fasta scores: E(): 4.1e-59, 66.23% id in 231 aa, and to Escherichia coli hypothetical protein ykgg or b0308 SWALL:YKGG_ECOLI (SWALL:P77433) (231 aa) fasta scores: E(): 1.3e-58, 65.8% id in 231 aa. (231 aa)    
Predicted Functional Partners:
ECA1919
Similar to Escherichia coli putative electron transport protein ykgf or b0307 SWALL:YKGF_ECOLI (SWALL:P77536) (475 aa) fasta scores: E(): 1.4e-163, 85.83% id in 473 aa, and to Shigella flexneri orf, conserved hypothetical protein ykgf or sf0259 SWALL:AAN41919 (EMBL:AE015061) (475 aa) fasta scores: E(): 1.7e-163, 85.83% id in 473 aa.
 
 
 0.997
ECA1920
Similar to Escherichia coli hypothetical protein ykge or b0306 SWALL:YKGE_ECOLI (SWALL:P77252) (239 aa) fasta scores: E(): 3.5e-78, 79.49% id in 239 aa, and to Shigella flexneri putative dehydrogenase subunit ykge or sf0260 SWALL:AAN41920 (EMBL:AE015061) (239 aa) fasta scores: E(): 1.7e-78, 80.33% id in 239 aa.
 
 
 0.981
ECA1921
L-lactate permease; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
 
   
 0.858
glpC
Similar to Escherichia coli, and Escherichia coli O157:H7 anaerobic glycerol-3-phosphate dehydrogenase subunit C GlpC or b2243 or z3501 or ecs3128 SWALL:GLPC_ECOLI (SWALL:P13034) (396 aa) fasta scores: E(): 2.2e-126, 76.82% id in 397 aa.
 
 
 0.829
ECA1856
Putative FAD-binding oxidase; Similar to Yersinia pestis hypothetical protein ypo2407 or y1932 SWALL:AAM85498 (EMBL:AJ414152) (1018 aa) fasta scores: E(): 0, 82.41% id in 1018 aa, and to Escherichia coli hypothetical protein ydij or b1687 SWALL:YDIJ_ECOLI (SWALL:P77748) (1018 aa) fasta scores: E(): 0, 79.05% id in 1017 aa.
  
 
 0.788
pta
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
  
  
 0.741
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
  
  
 0.621
maeB
Similar to Escherichia coli NADP-dependent malic enzyme MaeB or b2463 SWALL:MAO2_ECOLI (SWALL:P76558) (759 aa) fasta scores: E(): 0, 84.32% id in 759 aa.
  
  
 0.570
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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