STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1939Similar to Escherichia coli O157:H7 putative symport protein z0888 or ecs0758 SWALL:Q8X4W0 (EMBL:AE005251) (426 aa) fasta scores: E(): 2.1e-69, 49.63% id in 413 aa, and to Ralstonia solanacearum putative glutamate symport transmembrane protein rsc1957 or rs03531 SWALL:Q8XY06 (EMBL:AL646067) (428 aa) fasta scores: E(): 2.5e-96, 63.4% id in 429 aa; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. (427 aa)    
Predicted Functional Partners:
ECA1940
Hypothetical protein; No significant database matches.
       0.538
sdhD
Succinate dehydrogenase hydrophobic membrane anchor protein; Membrane-anchoring subunit of succinate dehydrogenase (SDH).
   
  
 0.503
citM
Similar to Bacillus subtilis Mg(2+)/citrate complex secondary transporter CitM SWALL:CITM_BACSU (SWALL:P55069) (433 aa) fasta scores: E(): 7.6e-53, 40.76% id in 444 aa, and to Xylella fastidiosa Mg++/citrate complex transporter xf0320 SWALL:Q9PGI0 (EMBL:AE003885) (457 aa) fasta scores: E(): 1.1e-68, 41.83% id in 447 aa.
      
 0.479
citM-2
Citrate transporter; Similar to Bacillus subtilis mg citM SWALL:CITM_BACSU (SWALL:P55069) (433 aa) fasta scores: E(): 1.4e-80, 53.24% id in 432 aa, and to Bacillus subtilis citrate transporter CitN or CitH or n15cR SWALL:CITN_BACSU (SWALL:P42308) (426 aa) fasta scores: E(): 3.2e-91, 57.14% id in 434 aa.
      
 0.473
maeB
Similar to Escherichia coli NADP-dependent malic enzyme MaeB or b2463 SWALL:MAO2_ECOLI (SWALL:P76558) (759 aa) fasta scores: E(): 0, 84.32% id in 759 aa.
  
  
 0.445
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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