STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1947Putative sugar-binding periplasmic protein (pseudogene); 1 probable transmembrane helix predicted for ECA1945 by TMHMM2.0 at aa 34-56. (212 aa)    
Predicted Functional Partners:
ECA1949
Putative sugar ABC transporter, permease protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 ribose transport system permease protein RbsC or b3750 or c4678 or z5251 or ecs4692 SWALL:RBSC_ECOLI (SWALL:P04984) (321 aa) fasta scores: E(): 2e-30, 38.92% id in 316 aa, and to Yersinia pestis putative sugar ABC transporter, permease protein ypo3315 or RbsC or y0874 SWALL:Q8ZBT0 (EMBL:AJ414156) (381 aa) fasta scores: E(): 5.3e-111, 87.84% id in 362 aa.
 
     0.866
ECA1948
Putative sugar ABC transporter, ATP-binding protein; Similar to Escherichia coli D-xylose transport ATP-binding protein XylG or b3567 SWALL:XYLG_ECOLI (SWALL:P37388) (513 aa) fasta scores: E(): 3.6e-64, 41.23% id in 502 aa, and to Yersinia pestis putative sugar ABC transporter, ATP-binding protein ypo3316 or y0873 SWALL:AAM84458 (EMBL:AJ414156) (507 aa) fasta scores: E(): 2.3e-134, 78.52% id in 503 aa.
 
     0.835
ECA1951
Putative transketolase C-terminal section; Similar to Escherichia coli 1-deoxy-D-xylulose 5-phosphate synthase Dxs or b0420 SWALL:DXS_ECOLI (SWALL:P77488) (619 aa) fasta scores: E(): 7.6e-18, 30.24% id in 281 aa, and to Yersinia pestis c-terminal region of transketolase ypo3313 SWALL:Q8ZBT2 (EMBL:AJ414156) (314 aa) fasta scores: E(): 2e-97, 80.19% id in 313 aa.
 
     0.786
ECA4381
Putative DNA-binding protein; Similar to Shigella flexneri yjjm gene product yjjm or sf4388 SWALL:AAN45804 (EMBL:AE015445) (304 aa) fasta scores: E(): 2.8e-109, 88.81% id in 304 aa, and to Escherichia coli hypothetical protein yjjm or b4357 SWALL:YJJM_ECOLI (SWALL:P39399) (268 aa) fasta scores: E(): 6.2e-95, 88.06% id in 268 aa.
  
     0.715
ECA1950
Similar to the N-terminal region of Homo sapiens transketolase Tkt or Tkt1 SWALL:TKT_HUMAN (SWALL:P29401) (623 aa) fasta scores: E(): 1.8e-21, 34.22% id in 263 aa, and to Yersinia pestis putative N-terminal region of transketolase ypo3314 SWALL:Q8ZBT1 (EMBL:AJ414156) (276 aa) fasta scores: E(): 3e-96, 88.4% id in 276 aa.
 
     0.699
ECA1954
Similar to Yersinia pestis putative transcriptional regulatory protein ypo3310 or y0878 SWALL:AAM84462 (EMBL:AJ414156) (314 aa) fasta scores: E(): 6.9e-93, 82.16% id in 314 aa, and to Agrobacterium tumefaciens transcriptional regulator atu1904 or agr_c_3494 SWALL:Q8UE57 (EMBL:AE009144) (319 aa) fasta scores: E(): 1.3e-40, 40.19% id in 316 aa.
 
     0.673
apsI
Putative xylose isomerase; Involved in catabolism of D-apiose. Catalyzes isomerization of D-apiose to apulose.
 
     0.657
ECA2357
Putative kinase; Similar to Brucella suis shikimate kinase Arok or br2029 SWALL:Q8FY59 (EMBL:AE014491) (200 aa) fasta scores: E(): 2.3, 20.78% id in 178 aa, and to the C-terminal region of Rhizobium loti glucokinase mlr3412 SWALL:Q98GB0 (EMBL:AP003001) (482 aa) fasta scores: E(): 1.5e-27, 45.71% id in 175 aa.
  
     0.588
traF
Putative plasmid transfer protein; Similar to Shigella sonnei TraF protein SWALL:Q9Z4A1 (EMBL:AB021078) (400 aa) fasta scores: E(): 2.9e-81, 55% id in 400 aa, and to Salmonella typhimurium TraF protein SWALL:Q9R2H5 (EMBL:AB027308) (400 aa) fasta scores: E(): 3.4e-81, 54.75% id in 400 aa, and to Escherichia fergusonii TraF SWALL:Q8KR61 (EMBL:AY046057) (401 aa) fasta scores: E(): 1e-61, 44.52% id in 402 aa.
  
     0.538
aplK
Glycerol kinase; Involved in catabolism of D-apiose. Catalyzes phosphorylation of apulose to form apulose 4-phosphate.
       0.491
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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