Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ECA1951Putative transketolase C-terminal section; Similar to Escherichia coli 1-deoxy-D-xylulose 5-phosphate synthase Dxs or b0420 SWALL:DXS_ECOLI (SWALL:P77488) (619 aa) fasta scores: E(): 7.6e-18, 30.24% id in 281 aa, and to Yersinia pestis c-terminal region of transketolase ypo3313 SWALL:Q8ZBT2 (EMBL:AJ414156) (314 aa) fasta scores: E(): 2e-97, 80.19% id in 313 aa. (314 aa)    
Predicted Functional Partners:
ECA1950
Similar to the N-terminal region of Homo sapiens transketolase Tkt or Tkt1 SWALL:TKT_HUMAN (SWALL:P29401) (623 aa) fasta scores: E(): 1.8e-21, 34.22% id in 263 aa, and to Yersinia pestis putative N-terminal region of transketolase ypo3314 SWALL:Q8ZBT1 (EMBL:AJ414156) (276 aa) fasta scores: E(): 3e-96, 88.4% id in 276 aa.
 0.999
ECA0824
Similar to Rhodospirillum rubrum pyruvate-flavodoxin oxidoreductase NifJ SWALL:NIFJ_RHORU (SWALL:Q53046) (1191 aa) fasta scores: E(): 0, 54.73% id in 1182 aa, and to Escherichia coli probable pyruvate-flavodoxin oxidoreductase ydbk or b1378 SWALL:NIFJ_ECOLI (SWALL:P52647) (1174 aa) fasta scores: E(): 0, 78.79% id in 1174 aa. Also similar to ECA2957 (47.377% id. in 1182 aa overlap).
   
 
  0.945
rpiB
Ribose 5-phosphate isomerase; Involved in catabolism of D-apiose. Catalyzes the isomerization of D-erythrulose 4-phosphate to D-erythrose 4-phosphate.
 
  
 0.826
ECA0293
Similar to Yersinia pestis hypothetical protein ypo3577 SWALL:Q8ZB48 (EMBL:AJ414157) (328 aa) fasta scores: E(): 2e-101, 81.59% id in 326 aa, and to Escherichia coli hypothetical protein Yrbh SWALL:YRBH_ECOLI (SWALL:P45395) (328 aa) fasta scores: E(): 2e-95, 78.08% id in 324 aa.
    
  0.822
napF
Ferredoxin-type protein; Could be involved in the maturation of NapA, the catalytic subunit of the periplasmic nitrate reductase, before its export into the periplasm; Belongs to the NapF family.
   
 
  0.819
rpe
Ribulose-phosphate 3-epimerase; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri ribulose-phosphate 3-epimerase Rpe or Dod or b3386 or c4156 or z4739 or ecs4228 or sf3404 SWALL:RPE_ECOLI (SWALL:P32661) (225 aa) fasta scores: E(): 5.1e-71, 83.92% id in 224 aa.
  
 
 0.810
aplK
Glycerol kinase; Involved in catabolism of D-apiose. Catalyzes phosphorylation of apulose to form apulose 4-phosphate.
  
    0.792
ECA1947
Putative sugar-binding periplasmic protein (pseudogene); 1 probable transmembrane helix predicted for ECA1945 by TMHMM2.0 at aa 34-56.
 
     0.784
rpiA
Ribose 5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
    
 0.778
gapA
Glyceraldehyde 3-phosphate dehydrogenase a; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri glyceraldehyde 3-phosphate dehydrogenase A GapA or b1779 or c2184 or z2818 or ecs2488 or sf1444 SWALL:G3P1_ECOLI (SWALL:P06977) (330 aa) fasta scores: E(): 3.2e-112, 90.6% id in 330 aa; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
    
  0.774
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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