Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ECA1958 | infA | ECA1958 | ECA2653 | Putative translation initiaiton factor; Similar to Escherichia coli protein ycih or b1282 SWALL:YCIH_ECOLI (SWALL:P08245) (108 aa) fasta scores: E(): 1.6e-29, 83.01% id in 106 aa, and to Salmonella typhimurium, and Salmonella typhi protein ycih or stm1706 or sty1345 SWALL:YCIH_SALTY (SWALL:P20770) (108 aa) fasta scores: E(): 1.2e-28, 80.18% id in 106 aa. | Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 0.927 |
| ECA1958 | rpsC | ECA1958 | ECA4025 | Putative translation initiaiton factor; Similar to Escherichia coli protein ycih or b1282 SWALL:YCIH_ECOLI (SWALL:P08245) (108 aa) fasta scores: E(): 1.6e-29, 83.01% id in 106 aa, and to Salmonella typhimurium, and Salmonella typhi protein ycih or stm1706 or sty1345 SWALL:YCIH_SALTY (SWALL:P20770) (108 aa) fasta scores: E(): 1.2e-28, 80.18% id in 106 aa. | 30S ribosomal subunit protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.935 |
| ECA1958 | rpsG | ECA1958 | ECA4037 | Putative translation initiaiton factor; Similar to Escherichia coli protein ycih or b1282 SWALL:YCIH_ECOLI (SWALL:P08245) (108 aa) fasta scores: E(): 1.6e-29, 83.01% id in 106 aa, and to Salmonella typhimurium, and Salmonella typhi protein ycih or stm1706 or sty1345 SWALL:YCIH_SALTY (SWALL:P20770) (108 aa) fasta scores: E(): 1.2e-28, 80.18% id in 106 aa. | 30S ribosomal subunit protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.883 |
| ECA1958 | rpsJ | ECA1958 | ECA4032 | Putative translation initiaiton factor; Similar to Escherichia coli protein ycih or b1282 SWALL:YCIH_ECOLI (SWALL:P08245) (108 aa) fasta scores: E(): 1.6e-29, 83.01% id in 106 aa, and to Salmonella typhimurium, and Salmonella typhi protein ycih or stm1706 or sty1345 SWALL:YCIH_SALTY (SWALL:P20770) (108 aa) fasta scores: E(): 1.2e-28, 80.18% id in 106 aa. | 30S ribosomal subunit protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.908 |
| ECA1958 | rpsL | ECA1958 | ECA4038 | Putative translation initiaiton factor; Similar to Escherichia coli protein ycih or b1282 SWALL:YCIH_ECOLI (SWALL:P08245) (108 aa) fasta scores: E(): 1.6e-29, 83.01% id in 106 aa, and to Salmonella typhimurium, and Salmonella typhi protein ycih or stm1706 or sty1345 SWALL:YCIH_SALTY (SWALL:P20770) (108 aa) fasta scores: E(): 1.2e-28, 80.18% id in 106 aa. | 30S ribosomal subunit protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.889 |
| ECA1958 | rpsM | ECA1958 | ECA4009 | Putative translation initiaiton factor; Similar to Escherichia coli protein ycih or b1282 SWALL:YCIH_ECOLI (SWALL:P08245) (108 aa) fasta scores: E(): 1.6e-29, 83.01% id in 106 aa, and to Salmonella typhimurium, and Salmonella typhi protein ycih or stm1706 or sty1345 SWALL:YCIH_SALTY (SWALL:P20770) (108 aa) fasta scores: E(): 1.2e-28, 80.18% id in 106 aa. | 30S ribosomal subunit protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.881 |
| ECA1958 | rpsN | ECA1958 | ECA4018 | Putative translation initiaiton factor; Similar to Escherichia coli protein ycih or b1282 SWALL:YCIH_ECOLI (SWALL:P08245) (108 aa) fasta scores: E(): 1.6e-29, 83.01% id in 106 aa, and to Salmonella typhimurium, and Salmonella typhi protein ycih or stm1706 or sty1345 SWALL:YCIH_SALTY (SWALL:P20770) (108 aa) fasta scores: E(): 1.2e-28, 80.18% id in 106 aa. | 30S ribosomal subunit protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.890 |
| ECA1958 | rpsO | ECA1958 | ECA0715 | Putative translation initiaiton factor; Similar to Escherichia coli protein ycih or b1282 SWALL:YCIH_ECOLI (SWALL:P08245) (108 aa) fasta scores: E(): 1.6e-29, 83.01% id in 106 aa, and to Salmonella typhimurium, and Salmonella typhi protein ycih or stm1706 or sty1345 SWALL:YCIH_SALTY (SWALL:P20770) (108 aa) fasta scores: E(): 1.2e-28, 80.18% id in 106 aa. | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.899 |
| ECA1958 | rpsQ | ECA1958 | ECA4022 | Putative translation initiaiton factor; Similar to Escherichia coli protein ycih or b1282 SWALL:YCIH_ECOLI (SWALL:P08245) (108 aa) fasta scores: E(): 1.6e-29, 83.01% id in 106 aa, and to Salmonella typhimurium, and Salmonella typhi protein ycih or stm1706 or sty1345 SWALL:YCIH_SALTY (SWALL:P20770) (108 aa) fasta scores: E(): 1.2e-28, 80.18% id in 106 aa. | 30S ribosomal subunit protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.920 |
| ECA1958 | rpsS | ECA1958 | ECA4027 | Putative translation initiaiton factor; Similar to Escherichia coli protein ycih or b1282 SWALL:YCIH_ECOLI (SWALL:P08245) (108 aa) fasta scores: E(): 1.6e-29, 83.01% id in 106 aa, and to Salmonella typhimurium, and Salmonella typhi protein ycih or stm1706 or sty1345 SWALL:YCIH_SALTY (SWALL:P20770) (108 aa) fasta scores: E(): 1.2e-28, 80.18% id in 106 aa. | 30S ribosomal subunit protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.887 |
| infA | ECA1958 | ECA2653 | ECA1958 | Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | Putative translation initiaiton factor; Similar to Escherichia coli protein ycih or b1282 SWALL:YCIH_ECOLI (SWALL:P08245) (108 aa) fasta scores: E(): 1.6e-29, 83.01% id in 106 aa, and to Salmonella typhimurium, and Salmonella typhi protein ycih or stm1706 or sty1345 SWALL:YCIH_SALTY (SWALL:P20770) (108 aa) fasta scores: E(): 1.2e-28, 80.18% id in 106 aa. | 0.927 |
| infA | rpsC | ECA2653 | ECA4025 | Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 30S ribosomal subunit protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.998 |
| infA | rpsG | ECA2653 | ECA4037 | Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 30S ribosomal subunit protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.998 |
| infA | rpsJ | ECA2653 | ECA4032 | Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 30S ribosomal subunit protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.997 |
| infA | rpsL | ECA2653 | ECA4038 | Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 30S ribosomal subunit protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.997 |
| infA | rpsM | ECA2653 | ECA4009 | Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 30S ribosomal subunit protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.997 |
| infA | rpsN | ECA2653 | ECA4018 | Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 30S ribosomal subunit protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.995 |
| infA | rpsO | ECA2653 | ECA0715 | Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.988 |
| infA | rpsQ | ECA2653 | ECA4022 | Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 30S ribosomal subunit protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.997 |
| infA | rpsS | ECA2653 | ECA4027 | Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 30S ribosomal subunit protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.998 |
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