Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
aidAConserved hypothetical protein; Similar to Ralstonia solanacearum AidA SWALL:O30918 (EMBL:AF021840) (167 aa) fasta scores: E(): 2.2e-11, 32.75% id in 174 aa. Expression of aidA in R. solanacearum is acyl-homoserine lactones dependent. (184 aa)    
Predicted Functional Partners:
traR
Putative conjugal transfer protein; Similar to Escherichia coli TraR protein TraR SWALL:TRAR_ECOLI (SWALL:P41065) (73 aa) fasta scores: E(): 1e-06, 41.66% id in 72 aa.
      
 0.496
fecR
iron(III) dicitrate sensor protein; Similar to Escherichia coli protein FecR or b4292 SWALL:FECR_ECOLI (SWALL:P23485) (317 aa) fasta scores: E(): 7.6e-87, 69.55% id in 312 aa, and to Shigella flexneri 2a FecR SWALL:AAL08457 (EMBL:AF326777) (317 aa) fasta scores: E(): 7.6e-87, 69.55% id in 312 aa.
      
 0.461
fecI
Similar to Escherichia coli probable RNA polymerase sigma factor FecI or b4293 SWALL:FECI_ECOLI (SWALL:P23484) (173 aa) fasta scores: E(): 1.1e-48, 78.61% id in 173 aa, and to Shigella flexneri 2a FecI SWALL:AAL08458 (EMBL:AF326777) (173 aa) fasta scores: E(): 1.1e-48, 78.61% id in 173 aa; Belongs to the sigma-70 factor family. ECF subfamily.
      
 0.461
ohr
Similar to Xanthomonas axonopodis organic hydroperoxide resistance protein Ohr or xac0282 SWALL:OHR_XANAC (SWALL:O68390) (142 aa) fasta scores: E(): 7.1e-36, 71.94% id in 139 aa, and to Ralstonia solanacearum probable organic hydroperoxide resistance protein Ohr or rsp1107 or rs02615 SWALL:Q8XQW1 (EMBL:AL646082) (141 aa) fasta scores: E(): 2.7e-40, 77.3% id in 141 aa.
      
 0.435
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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