STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sapAPeptide transport periplasmic protein; Similar to Erwinia chrysanthemi SapA protein SWALL:O86187 (EMBL:AJ222649) (540 aa) fasta scores: E(): 1.5e-178, 80.92% id in 540 aa, and to Salmonella typhimurium peptide transport periplasmic protein SapA precursor or stm1692 SWALL:SAPA_SALTY (SWALL:P36634) (549 aa) fasta scores: E(): 6.1e-161, 71.4% id in 535 aa. (562 aa)    
Predicted Functional Partners:
sapC
Peptide transport system permease protein; Similar to Erwinia chrysanthemi SapC protein SWALL:O86189 (EMBL:AJ222649) (296 aa) fasta scores: E(): 1.5e-89, 78.37% id in 296 aa, and to Salmonella typhimurium, and Salmonella typhi peptide transport system permease protein SapC or stm1694 or sty1357 SWALL:SAPC_SALTY (SWALL:P36669) (296 aa) fasta scores: E(): 2.5e-87, 75.33% id in 296 aa.
 
 
 0.995
sapB
Peptide transport system permease protein; Similar to Erwinia chrysanthemi SapB protein SWALL:O86188 (EMBL:AJ222649) (313 aa) fasta scores: E(): 2.2e-84, 71.65% id in 321 aa, and to Salmonella typhimurium, and Salmonella typhi peptide transport system permease protein SapB or stm1693 or sty1368 SWALL:SAPB_SALTY (SWALL:P36668) (321 aa) fasta scores: E(): 9.2e-94, 73.2% id in 321 aa.
 
  
 0.994
sapD
Peptide transport system ATP-binding protein; Similar to Erwinia chrysanthemi SapD protein SWALL:O86190 (EMBL:AJ222649) (330 aa) fasta scores: E(): 1.6e-113, 86.32% id in 329 aa, and to Salmonella typhimurium peptide transport system ATP-binding protein SapD or stm1695 SWALL:SAPD_SALTY (SWALL:P36636) (330 aa) fasta scores: E(): 6.3e-111, 85.36% id in 328 aa; Belongs to the ABC transporter superfamily.
 
  
 0.872
sapF
Peptide transport system ATP-binding protein; Similar to Erwinia chrysanthemi SapF protein SWALL:O86191 (EMBL:AJ222649) (269 aa) fasta scores: E(): 5.2e-80, 88.8% id in 268 aa, and to Salmonella typhimurium peptide transport system ATP-binding protein SapF or stm1696 SWALL:SAPF_SALTY (SWALL:P36638) (268 aa) fasta scores: E(): 9e-75, 80.89% id in 267 aa.
 
  
 0.841
dppB
Dipeptide transport system permease protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 dipeptide transport system permease protein DppB or b3543 or c4358 or z4960 or ecs4423 SWALL:DPPB_ECOLI (SWALL:P37316) (339 aa) fasta scores: E(): 2.1e-118, 90.26% id in 339 aa.
 
 
 0.832
dppC
Dipeptide transport system permease protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 dipeptide transport system permease protein DppC or b3542 or c4357 or z4959 or ecs4422 SWALL:DPPC_ECOLI (SWALL:P37315) (300 aa) fasta scores: E(): 6e-98, 86.33% id in 300 aa.
   0.829
ECA4075
Similar to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu3459 or agr_l_2740 SWALL:Q8UAB5 (EMBL:AE009276) (360 aa) fasta scores: E(): 2.4e-83, 63.15% id in 342 aa, and to Rhizobium meliloti putative dipeptide transport system permease ABC transporter protein dppb2 or r02412 or smc01526 SWALL:Q92N27 (EMBL:AL591790) (347 aa) fasta scores: E(): 1.7e-70, 56.4% id in 328 aa.
 
 
 0.775
ECA1548
Similar to Streptomyces coelicolor putative transport system permease protein sco6645 or sc4g2.19 SWALL:O86691 (EMBL:AL939128) (601 aa) fasta scores: E(): 9.4e-94, 50.35% id in 562 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein nikb or atu1198 or agr_c_2209 SWALL:Q8UG44 (EMBL:AE009082) (314 aa) fasta scores: E(): 3.6e-20, 31.33% id in 300 aa.
 
 
 0.722
ECA0824
Similar to Rhodospirillum rubrum pyruvate-flavodoxin oxidoreductase NifJ SWALL:NIFJ_RHORU (SWALL:Q53046) (1191 aa) fasta scores: E(): 0, 54.73% id in 1182 aa, and to Escherichia coli probable pyruvate-flavodoxin oxidoreductase ydbk or b1378 SWALL:NIFJ_ECOLI (SWALL:P52647) (1174 aa) fasta scores: E(): 0, 78.79% id in 1174 aa. Also similar to ECA2957 (47.377% id. in 1182 aa overlap).
  
    0.699
ECA4074
Similar to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu3458 or agr_l_2741 SWALL:Q8UAB6 (EMBL:AE009276) (295 aa) fasta scores: E(): 5.9e-75, 64.18% id in 282 aa, and to Rhizobium meliloti putative dipeptide transport system permease ABC transporter protein dppc2 or r02411 or smc01527 SWALL:Q92N28 (EMBL:AL591790) (310 aa) fasta scores: E(): 4.7e-66, 54.8% id in 312 aa.
   0.639
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.