STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pspFSimilar to Escherichia coli psp operon transcriptional activator pspf or b1303 SWALL:PSPF_ECOLI (SWALL:P37344) (325 aa) fasta scores: E(): 1.8e-95, 76.61% id in 325 aa. (329 aa)    
Predicted Functional Partners:
pspA
Phage shock protein A; Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri phage shock protein A PspA or b1304 or z2482 or ecs1881 or sf1309 SWALL:PSPA_ECOLI (SWALL:P23853) (221 aa) fasta scores: E(): 1.6e-50, 83.41% id in 217 aa.
 
 
 
 0.983
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
 
 
 0.883
pspC
Phage shock protein C; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri phage shock protein C PspC or b1306 or c1777 or z2479 or ecs1883 or sf1311 SWALL:PSPC_ECOLI (SWALL:P23855) (119 aa) fasta scores: E(): 1.5e-25, 63.15% id in 114 aa.
 
   
 0.761
ECA0777
Conserved hypothetical protein; Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri phage shock protein a pspa or b1304 or z2482 or ecs1881 or sf1309 SWALL:PSPA_ECOLI (SWALL:P23853) (221 aa) fasta scores: E(): 0.00016, 20% id in 225 aa, and to Oceanobacillus iheyensis phage shock protein a ob0940 SWALL:BAC12896 (EMBL:AP004596) (223 aa) fasta scores: E(): 7.9e-11, 26.87% id in 227 aa.
   
 
 0.725
rpoC
DNA-directed RNA polymerase beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
   0.692
manX
PTS system, mannose-specific IIab component; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri PTS system, mannose-specific iiab component ManX or PtsL or GptB or b1817 or c2223 or z2860 or ecs2527 or sf1411 SWALL:PTNA_ECOLI (SWALL:P08186) (322 aa) fasta scores: E(): 5.5e-80, 74.84% id in 322 aa.
  
  
 0.689
pspB
Phage shock protein B; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 phage shock protein B PspB or b1305 or c1775 or z2480 or ecs1882 SWALL:PSPB_ECOLI (SWALL:P23854) (74 aa) fasta scores: E(): 4.9e-18, 70.83% id in 72 aa.
 
   
 0.648
rpoZ
DNA-directed RNA polymerase omega chain; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.643
rpoB
DNA-directed RNA polymerase, beta-subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.643
rpoA
DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.643
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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