STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1986Conserved hypothetical protein; Similar to Yersinia enterocolitica hypothetical 52.6 kDa protein ycjX SWALL:Q9F4H0 (EMBL:AY008264) (465 aa) fasta scores: E(): 4.4e-166, 81.93% id in 465 aa, and to Escherichia coli hypothetical protein ycjx or b1321 SWALL:YCJX_ECOLI (SWALL:P76046) (465 aa) fasta scores: E(): 1.1e-154, 76.34% id in 465 aa. (465 aa)    
Predicted Functional Partners:
ECA1987
Putative membrane protein; Similar to Escherichia coli, and Escherichia coli O6 hypothetical protein ycjf or b1322 or c1794 SWALL:YCJF_ECOLI (SWALL:P45525) (353 aa) fasta scores: E(): 1.2e-102, 75.28% id in 348 aa, and to Shigella flexneri orf, conserved hypothetical protein ycjf or sf1328 SWALL:AAN42934 (EMBL:AE015159) (353 aa) fasta scores: E(): 1.5e-102, 75% id in 348 aa.
 
  
 0.990
pspB
Phage shock protein B; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 phage shock protein B PspB or b1305 or c1775 or z2480 or ecs1882 SWALL:PSPB_ECOLI (SWALL:P23854) (74 aa) fasta scores: E(): 4.9e-18, 70.83% id in 72 aa.
 
   
 0.627
mepA
Penicillin-insensitive murein endopeptidase; Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus. Belongs to the peptidase M74 family.
  
     0.620
pspC
Phage shock protein C; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri phage shock protein C PspC or b1306 or c1777 or z2479 or ecs1883 or sf1311 SWALL:PSPC_ECOLI (SWALL:P23855) (119 aa) fasta scores: E(): 1.5e-25, 63.15% id in 114 aa.
     
 0.566
tyrR
Similar to Erwinia herbicola transcriptional regulatory protein TyrR SWALL:TYRR_ERWHE (SWALL:Q9ZIB7) (521 aa) fasta scores: E(): 1.8e-138, 71.12% id in 523 aa.
  
  
 0.472
ECA1988
Putative peptidase; Similar to Deinococcus radiodurans arge/dape/acy1 family protein dr2025 SWALL:Q9RSU7 (EMBL:AE002039) (459 aa) fasta scores: E(): 3.4e-22, 29.93% id in 471 aa, and to Oceanobacillus iheyensis hypothetical conserved protein ob1111 SWALL:BAC13067 (EMBL:AP004596) (453 aa) fasta scores: E(): 8.2e-21, 29.91% id in 478 aa.
       0.470
nfi
Endonuclease V (pseudogene); 1 probable transmembrane helix predicted for ECA0236 by TMHMM2.0 at aa 102-124.
  
     0.446
pspA
Phage shock protein A; Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri phage shock protein A PspA or b1304 or z2482 or ecs1881 or sf1309 SWALL:PSPA_ECOLI (SWALL:P23853) (221 aa) fasta scores: E(): 1.6e-50, 83.41% id in 217 aa.
     
 0.437
ECA2338
Similar to Yersinia pestis putative nitroreductase ypo2163 or y2159 SWALL:Q8ZEK2 (EMBL:AJ414151) (183 aa) fasta scores: E(): 1.3e-57, 73.22% id in 183 aa, and to Salmonella typhimurium, and Salmonella typhi putative oxidoreductase ydja or stm1296 or sty1818 SWALL:Q8XGY1 (EMBL:AE008756) (183 aa) fasta scores: E(): 4.3e-52, 69.39% id in 183 aa.
  
     0.431
ECA2545
Similar to Yersinia pestis putative exported protein ypo1408 or y2762 SWALL:Q8ZG97 (EMBL:AJ414148) (182 aa) fasta scores: E(): 4.6e-60, 82.41% id in 182 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein ycbk or b0926 or c1068 or z1273 or ecs1009 or sf0923 SWALL:YCBK_ECOLI (SWALL:P75848) (182 aa) fasta scores: E(): 5.1e-56, 78.57% id in 182 aa.
  
     0.417
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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