STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2008Putative signaling protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa2567 SWALL:Q9I0R8 (EMBL:AE004685) (587 aa) fasta scores: E(): 1.7e-61, 32.99% id in 582 aa, and to Xanthomonas campestris hypothetical protein Xcc1777 SWALL:Q8P9S1 (EMBL:AE012279) (618 aa) fasta scores: E(): 2e-57, 32.88% id in 590 aa. (592 aa)    
Predicted Functional Partners:
ECA3270
Putative exported protein; Similar to Rhizobium meliloti hypothetical protein r00959 or smc00038 SWALL:Q92KJ3 (EMBL:AL591785) (772 aa) fasta scores: E(): 1e-48, 35.35% id in 461 aa, and to Xanthomonas campestris c-di-gmp phosphodiesterase A PdeA or xcc1865 SWALL:Q8P9J8 (EMBL:AE012289) (726 aa) fasta scores: E(): 1.1e-41, 31.81% id in 462 aa.
  
 0.987
ECA3886
Putative membrane protein; Similar to the C-terminal region of many including Pseudomonas aeruginosa hypothetical protein Pa2870 SWALL:Q9HZX6 (EMBL:AE004713) (525 aa) fasta scores: E(): 1.9e-17, 39.39% id in 165 aa, and to Shewanella oneidensis ggdef domain protein so4457 SWALL:AAN57422 (EMBL:AE015878) (485 aa) fasta scores: E(): 2.1e-17, 39.03% id in 187 aa.
 
 0.968
arcB
Similar to Escherichia coli, and Shigella flexneri aerobic respiration control sensor protein ArcB or b3210 or sf3250 SWALL:ARCB_ECOLI (SWALL:P22763) (778 aa) fasta scores: E(): 8.6e-180, 75.88% id in 788 aa, and to Yersinia pestis aerobic respiration control sensor/response regulatory protein ArcB SWALL:Q8ZB69 (EMBL:AJ414157) (778 aa) fasta scores: E(): 3.6e-190, 80.71% id in 788 aa.
 
 0.950
rpfA
Two-component sensor kinase and response regulator; Similar to Pectobacterium carotovorum subsp. carotovorum sensor/regulator protein RpfA SWALL:O08235 (EMBL:U62023) (929 aa) fasta scores: E(): 0, 92.88% id in 928 aa, and to Pectobacterium carotovorum subsp. carotovorum sensory kinase ExpS SWALL:O32556 (EMBL:Y13670) (928 aa) fasta scores: E(): 0, 95.36% id in 928 aa.
  
 0.940
ECA3199
Putative membrane protein; Similar to Yersinia pestis HmsT or ypo0425 or y3756 SWALL:AAM87301 (EMBL:AF129277) (390 aa) fasta scores: E(): 1.1e-12, 28.21% id in 319 aa, and to Pseudomonas putida GGDEF domain protein pp3452 SWALL:AAN69054 (EMBL:AE016786) (363 aa) fasta scores: E(): 2.2e-12, 32.65% id in 245 aa.
 
 
 0.929
ECA3625
Conserved hypothetical protein; Similar to Agrobacterium tumefaciens McpA SWALL:O68016 (EMBL:AF010180) (579 aa) fasta scores: E(): 1.9e-31, 36.54% id in 249 aa, and to Xanthomonas axonopodis chemotaxis protein mcpa or xac1746 SWALL:Q8PLP7 (EMBL:AE011806) (684 aa) fasta scores: E(): 1.3e-35, 36.56% id in 268 aa.
 
 0.918
ECA3374
Similar to Ralstonia solanacearum probable transmembrane protein rsc1893 or rs03455 SWALL:Q8XY70 (EMBL:AL646067) (533 aa) fasta scores: E(): 6.6e-66, 37.96% id in 511 aa, and to Pseudomonas putida ggdef family protein pp2413 SWALL:AAN68025 (EMBL:AE016783) (544 aa) fasta scores: E(): 3.3e-73, 41.66% id in 516 aa.
 
 0.903
ECA0266
Similar to Yersinia pestis putative exported protein ypo3664 SWALL:Q8ZAW7 (EMBL:AJ414158) (638 aa) fasta scores: E(): 3.6e-144, 55.91% id in 642 aa, and to Escherichia coli O6 hypothetical protein YhdA SWALL:AAN82448 (EMBL:AE016767) (646 aa) fasta scores: E(): 1.8e-137, 52.85% id in 649 aa.
 
  
 0.900
ECA1086
Putative signaling protein; Similar to the C-terminal regions of several including Pseudomonas aeruginosa hypothetical protein Pa1107 pa1107 SWALL:Q9I4M8 (EMBL:AE004541) (398 aa) fasta scores: E(): 2.1e-17, 39.68% id in 189 aa, and to Xanthomonas axonopodis ggdef family protein xac1939 SWALL:Q8PL67 (EMBL:AE011829) (948 aa) fasta scores: E(): 5.2e-16, 37.43% id in 203 aa.
 
 0.885
ECA2433
Putative signaling protein; Similar to Caulobacter crescentus sensory box/ggdef family protein cc3094 SWALL:Q9A3V7 (EMBL:AE005972) (748 aa) fasta scores: E(): 3.4e-74, 34.06% id in 731 aa, and to Rhizobium loti hypothetical protein Mll7787 SWALL:Q984Y8 (EMBL:AP003012) (724 aa) fasta scores: E(): 1.7e-66, 37.17% id in 581 aa.
 
 
0.835
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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