STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2010Putative exported protein; Similar to Escherichia coli O157:H7 hypothetical protein z1678 or ecs1422 SWALL:Q8X5A9 (EMBL:AE005315) (103 aa) fasta scores: E(): 0.0022, 28.12% id in 96 aa, and to Shigella flexneri orf, conserved hypothetical protein sf1040 SWALL:AAN42662 (EMBL:AE015132) (103 aa) fasta scores: E(): 0.0031, 27.08% id in 96 aa. (98 aa)    
Predicted Functional Partners:
ECA0941
Putative fimbrial chaperone; Similar to Proteus mirabilis chaperone protein PmfD SWALL:PMFD_PROMI (SWALL:P53520) (254 aa) fasta scores: E(): 8.9e-43, 46.72% id in 229 aa, and to Escherichia coli sfpd SWALL:Q933Y4 (EMBL:AJ131667) (243 aa) fasta scores: E(): 8e-41, 44.93% id in 247 aa, and to Escherichia coli chaperone protein PapD SWALL:PAPD_ECOLI (SWALL:P15319) (239 aa) fasta scores: E(): 2e-36, 42.98% id in 228 aa, and to Escherichia coli PrfD SWALL:CAD42028 (EMBL:AJ494981) (239 aa) fasta scores: E(): 2e-36, 42.98% id in 228 aa.
  
 
 0.499
ECA3075
Putative fimbrial chaperone; Similar to Pseudomonas aeruginosa probable pili assembly chaperone pa4651 SWALL:Q9HVE1 (EMBL:AE004879) (262 aa) fasta scores: E(): 1.3e-45, 49.78% id in 237 aa, and to Pseudomonas putida type 1 pili usher pathway chaperone CsuC or pp2361 SWALL:AAN67974 (EMBL:AE016782) (264 aa) fasta scores: E(): 8.6e-40, 45.6% id in 239 aa.
  
 
 0.499
ECA0942
Putative outer membrane usher protein; Similar to Photorhabdus luminescens MrfC SWALL:Q93MT4 (EMBL:AF396083) (851 aa) fasta scores: E(): 6.4e-137, 43.95% id in 810 aa, and to Proteus mirabilis outer membrane usher protein PmfC precursor pmfC SWALL:PMFC_PROMI (SWALL:P53514) (828 aa) fasta scores: E(): 3e-132, 42.75% id in 807 aa, and to Escherichia coli outer membrane usher protein PapC SWALL:PAPC_ECOLI (SWALL:P07110) (836 aa) fasta scores: E(): 1.6e-126, 43.34% id in 849 aa.
  
 
 0.435
ECA3076
Putative fimbrial usher protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa4652 SWALL:Q9HVE0 (EMBL:AE004879) (790 aa) fasta scores: E(): 1.3e-148, 51.74% id in 775 aa, and to Pseudomonas putida type 1 pili usher protein CsuD or pp2362 SWALL:AAN67975 (EMBL:AE016782) (797 aa) fasta scores: E(): 1.6e-125, 43.44% id in 778 aa.
  
 
 0.435
ECA2009
Putative exported protease; Similar to Shigella flexneri orf, conserved hypothetical protein sf1619 SWALL:AAN43202 (EMBL:AE015183) (273 aa) fasta scores: E(): 1.1e-59, 57.35% id in 272 aa, and to Escherichia coli putative protease ydgd precursor ydgd or b1598 SWALL:YDGD_ECOLI (SWALL:P76176) (273 aa) fasta scores: E(): 1.8e-59, 57.35% id in 272 aa; Belongs to the peptidase S1B family.
     
 0.426
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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