STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
asrAcid shock protein; Required for growth and/or survival at acidic conditions. (121 aa)    
Predicted Functional Partners:
arnB
Putative lipopolysaccharide biosynthesis protein; Catalyzes the conversion of UDP-4-keto-arabinose (UDP-Ara4O) to UDP-4-amino-4-deoxy-L-arabinose (UDP-L-Ara4N). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; Belongs to the DegT/DnrJ/EryC1 family. ArnB subfamily.
      
 0.761
psiE
Putative membrane protein; Similar to Yersinia pestis PsiE protein homolog PsiE or ypo3717 or y0025 SWALL:Q8ZAS3 (EMBL:AJ414158) (135 aa) fasta scores: E(): 2.3e-39, 75.55% id in 135 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri PsiE protein PsiE or b4030 or c5001 or sf4175 SWALL:AAN45596 (EMBL:J02812) (136 aa) fasta scores: E(): 1.9e-35, 71.53% id in 130 aa.
      
 0.743
rstB
Two component sensor kinase; Similar to Escherichia coli sensor protein RstB or UspT or b1609 SWALL:RSTB_ECOLI (SWALL:P18392) (433 aa) fasta scores: E(): 3.4e-113, 66.5% id in 424 aa.
  
    0.673
eda
Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri Khg/kdpg aldolase [includes: 4-hydroxy-2-oxoglutarate aldolase and 2- dehydro-3-deoxyphosphogluconate aldolase Eda or Hga or KdgA or b1850 or c2263 or z2902 or ecs2560 or sf1860 SWALL:ALKH_ECOLI (SWALL:P10177) (213 aa) fasta scores: E(): 1.2e-67, 89.15% id in 212 aa, and to Erwinia chrysanthemi khg/kdpg aldolase [includes: 4-hydroxy-2-oxoglutarate aldolase Eda or KdgA SWALL:ALKH_ERWCH (SWALL:P38448) (213 aa) fasta scores: E(): 7e-67, 89.2% id in 213 aa.
      
 0.657
amn
AMP nucleosidase; Catalyzes the hydrolysis of the N-glycosidic bond of AMP to form adenine and ribose 5-phosphate. Involved in regulation of AMP concentrations.
      
 0.551
iciA
Chromosome initiation inhibitor; Controls the transcription of genes involved in arginine and lysine metabolism; Belongs to the LysR transcriptional regulatory family.
      
 0.534
rstA
Two-component response regulator; Similar to Escherichia coli transcriptional regulatory protein RstA or UrpT or b1608 SWALL:RSTA_ECOLI (SWALL:P52108) (242 aa) fasta scores: E(): 3e-66, 74.68% id in 241 aa.
     
 0.532
proV
Similar to Escherichia coli glycine betaine/L-proline transport ATP-binding protein ProV or b2677 SWALL:PROV_ECOLI (SWALL:P14175) (400 aa) fasta scores: E(): 2e-112, 80.95% id in 399 aa.
      
 0.530
phoU
Phosphate transport system protein; Part of the phosphate (Pho) regulon, which plays a key role in phosphate homeostasis. PhoU is essential for the repression of the Pho regulon at high phosphate conditions.
   
  
 0.525
phoB
Phosphate regulon response regulator; Similar to Escherichia coli, and Escherichia coli O157:H7 phosphate regulon transcriptional regulatory protein PhoB or b0399 or z0497 or ecs0449 SWALL:PHOB_ECOLI (SWALL:P08402) (229 aa) fasta scores: E(): 1.5e-81, 89.08% id in 229 aa, and to Yersinia pestis phosphate regulon transcriptional regulatory protein PhoB or ypo3205 SWALL:Q8ZC21 (EMBL:AJ414155) (229 aa) fasta scores: E(): 1.6e-84, 93.88% id in 229 aa.
      
 0.499
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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