STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2014Similar to Listeria monocytogenes hypothetical protein Lmo1135 SWALL:Q8Y7Y4 (EMBL:AL591978) (383 aa) fasta scores: E(): 0.00071, 21.26% id in 395 aa. (399 aa)    
Predicted Functional Partners:
ECA2015
Putative exported protein; Similar to Xanthomonas axonopodis hypothetical protein Xac3032 SWALL:Q8PI66 (EMBL:AE011945) (220 aa) fasta scores: E(): 3.7e-08, 25.78% id in 190 aa, and to Xylella fastidiosa hypothetical protein Xf1840 SWALL:Q9PCE1 (EMBL:AE004005) (237 aa) fasta scores: E(): 6.4e-13, 29.89% id in 194 aa; Belongs to the UPF0312 family.
       0.479
rstB
Two component sensor kinase; Similar to Escherichia coli sensor protein RstB or UspT or b1609 SWALL:RSTB_ECOLI (SWALL:P18392) (433 aa) fasta scores: E(): 3.4e-113, 66.5% id in 424 aa.
       0.478
rstA
Two-component response regulator; Similar to Escherichia coli transcriptional regulatory protein RstA or UrpT or b1608 SWALL:RSTA_ECOLI (SWALL:P52108) (242 aa) fasta scores: E(): 3e-66, 74.68% id in 241 aa.
       0.478
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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