STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2016Similar to Rhizobium loti hypothetical protein Mlr7774 SWALL:Q984Z9 (EMBL:AP003012) (263 aa) fasta scores: E(): 7.7e-06, 25.4% id in 248 aa. (267 aa)    
Predicted Functional Partners:
ECA2017
Putative RNA polymerase sigma factor; Similar to Bradyrhizobium japonicum ECF sigma factor EcfA or bll6484 SWALL:BAC51749 (EMBL:AJ304855) (172 aa) fasta scores: E(): 2.1e-13, 36.66% id in 150 aa, and to Thiobacillus novellus RNA polymerase sigma factor SigE SWALL:Q9LA18 (EMBL:AF154565) (172 aa) fasta scores: E(): 1.8e-09, 34.26% id in 143 aa; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.934
ECA1485
Putative lipoprotein; Similar to Fusobacterium nucleatum hypothetical cytosolic protein Fn1347 SWALL:Q8RDZ4 (EMBL:AE010639) (218 aa) fasta scores: E(): 2.7e-21, 31.77% id in 214 aa, and to Rhizobium meliloti hypothetical protein ra0291 or sma0558 SWALL:Q930A7 (EMBL:AE007221) (170 aa) fasta scores: E(): 6.4e-06, 34.94% id in 83 aa.
  
     0.730
ECA4198
Putative exported phosphatase; Similar to Pseudomonas syringae phytase PhyM SWALL:AAN77879 (EMBL:AY156083) (428 aa) fasta scores: E(): 3.4e-77, 48.73% id in 433 aa, and to Escherichia coli glucose-1-phosphatase precursor Agp or b1002 SWALL:AGP_ECOLI (SWALL:P19926) (413 aa) fasta scores: E(): 1.5e-31, 31.08% id in 415 aa.
  
     0.661
virB8
Putative conjugal transfer protein; Similar to Escherichia coli VirB8 protein VirB8 SWALL:Q91UW9 (EMBL:AJ297913) (236 aa) fasta scores: E(): 2.8e-14, 29.46% id in 224 aa.
  
     0.649
ECA0343
Probable PTS system regulatory protein; Similar to Escherichia coli O6 putative transcriptional antiterminator c4488 SWALL:AAN82924 (EMBL:AE016769) (532 aa) fasta scores: E(): 1.5e-115, 59.37% id in 512 aa, and to Bacillus stearothermophilus MtlR protein SWALL:Q45419 (EMBL:U18943) (697 aa) fasta scores: E(): 3.1e-30, 25% id in 508 aa.
  
     0.614
ECA3724
Conserved phage-related protein; Similar to Salmonella typhi hypothetical protein Sty1620 SWALL:Q8Z6U6 (EMBL:AL627270) (317 aa) fasta scores: E(): 1.3e-89, 75.07% id in 317 aa.
  
     0.594
ECA1624
Hypothetical plasmid protein; No significant database matches.
  
     0.586
ECA1969
Putative NADH:flavin oxidoreductase; The C-terminal region of this CDS is similar to Shewanella frigidimarina fumarate reductase flavoprotein subunit precursor FccA or Fcc3 SWALL:FRDA_SHEFR (SWALL:Q02469) (596 aa) fasta scores: E(): 2.7e-64, 43.72% id in 462 aa, and to Staphylococcus epidermidis putative NADH-dependent flavin oxidoreductase se0195 SWALL:AAO03792 (EMBL:AE016744) (1005 aa) fasta scores: E(): 2.2e-69, 38.82% id in 1007 aa.
  
     0.570
ECA2018
Probable short-chain dehydrogenase; Similar to Escherichia coli, and Escherichia coli O157:H7 hypothetical oxidoreductase ydgb or b1606 or z2606 or ecs2312 SWALL:YDGB_ECOLI (SWALL:P52109) (240 aa) fasta scores: E(): 8.5e-56, 66.09% id in 233 aa, and to Pseudomonas aeruginosa probable short-chain dehydrogenase pa3437 SWALL:Q9HYG9 (EMBL:AE004764) (234 aa) fasta scores: E(): 7.6e-36, 47.08% id in 240 aa.
       0.559
ECA0509
Putative exported protein; Similar to Vibrio vulnificus hypothetical protein vv12312 SWALL:AAO10688 (EMBL:AE016804) (492 aa) fasta scores: E(): 5.5e-105, 53.91% id in 447 aa. No other significant database matches.
  
     0.558
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.