STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2020Hypothetical protein; No significant database matches. (858 aa)    
Predicted Functional Partners:
ECA2019
Hypothetical protein; No significant database matches.
     
 0.820
guaA
GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP.
  
  
 0.546
ogl
Oligogalacturonate lyase; Involved in degradation of pectin, which causes soft-rod disease in plants.
  
     0.498
ECA0056
Putative TonB-dependent heme receptor; Similar to Bordetella avium BhuR SWALL:Q8L1U7 (EMBL:AY095952) (855 aa) fasta scores: E(): 8.3e-14, 23.68% id in 874 aa, and to Pasteurella multocida HemR SWALL:Q9CN63 (EMBL:AE006093) (742 aa) fasta scores: E(): 1.5e-143, 51.04% id in 717 aa.
  
     0.465
ppdA
Similar to Escherichia coli prepilin peptidase dependent protein A precursor PpdA or b2826 SWALL:PPDA_ECOLI (SWALL:P33554) (156 aa) fasta scores: E(): 5.2e-19, 40% id in 150 aa, and to Salmonella typhimurium prepilin peptidase dependent protein a, putative component in type IVpilin biogenesis ppda or stm3000 SWALL:Q8ZMB0 (EMBL:AE008837) (156 aa) fasta scores: E(): 2.7e-20, 39.35% id in 155 aa.
  
     0.443
ECA2607
Similar to Bacteriophage P2 probable tail fiber assembly protein G SWALL:TFA_BPP2 (SWALL:P26699) (175 aa) fasta scores: E(): 0.00029, 34.01% id in 147 aa, and to Bacteriophage lambda tail fiber assembly protein tfA SWALL:TFA_LAMBD (SWALL:P03740) (194 aa) fasta scores: E(): 1.3e-18, 36.11% id in 180 aa.
  
     0.438
ECA4196
Putative acetyltransferase; Similar to Bacillus subtilis hypothetical protein yxel or lp9D SWALL:YXEL_BACSU (SWALL:P54951) (165 aa) fasta scores: E(): 1.2e-30, 49.69% id in 165 aa, and to Listeria innocua hypothetical protein Lin2444 lin2444 SWALL:Q928T8 (EMBL:AL596172) (178 aa) fasta scores: E(): 1.6e-20, 38.18% id in 165 aa.
  
     0.435
ECA3742
Similar to Salmonella typhi putative bacteriophage tail fiber assembly protein sty1639 SWALL:Q8Z6S7 (EMBL:AL627270) (205 aa) fasta scores: E(): 1.1e-18, 38.57% id in 197 aa, and to Bacteriophage HK97 gp29 tfA SWALL:Q9MCR5 (EMBL:AF069529) (202 aa) fasta scores: E(): 8.2e-20, 38.88% id in 198 aa.
  
     0.434
paeY
Similar to Erwinia chrysanthemi pectin acetylesterase PaeY SWALL:O32563 (EMBL:Y09828) (551 aa) fasta scores: E(): 8.8e-135, 61.07% id in 542 aa.
  
     0.422
matP
Conserved hypothetical protein; Required for spatial organization of the terminus region of the chromosome (Ter macrodomain) during the cell cycle. Prevents early segregation of duplicated Ter macrodomains during cell division. Binds specifically to matS, which is a 13 bp signature motif repeated within the Ter macrodomain.
  
     0.412
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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