STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2023Putative siderophore-interacting protein; Similar to Vibrio vulnificus vulnibactin utilization protein ViuB or vv20837 SWALL:AAO07760 (EMBL:U32676) (271 aa) fasta scores: E(): 1.2e-26, 34.48% id in 261 aa, and to Stigmatella aurantiaca MxcB mxcB SWALL:Q9F641 (EMBL:AF299336) (270 aa) fasta scores: E(): 2.1e-21, 33.84% id in 260 aa. (267 aa)    
Predicted Functional Partners:
entB
Enterobactin synthetase component B (isochorismatase); Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri isochorismatase EntB or EntG or b0595 or z0737 or ecs0634 or sf0509 SWALL:ENTB_ECOLI (SWALL:P15048) (285 aa) fasta scores: E(): 1.1e-69, 63.63% id in 286 aa.
 
  
 0.827
entE
Similar to Escherichia coli enterobactin synthetase component E [includes: 2,3-dihydroxybenzoate-AMP ligase; S-dihydroxybenzoyltransferase] EntE SWALL:ENTE_ECOLI (SWALL:P10378) (536 aa) fasta scores: E(): 1.1e-129, 64.63% id in 540 aa; EC number 7.7.58.
 
  
 0.781
ECA0705
Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa.
  
  
 0.669
hemS
Hemin transport protein; Similar to Yersinia enterocolitica hemin transport protein HemS SWALL:HEMS_YEREN (SWALL:P31517) (345 aa) fasta scores: E(): 2.2e-92, 65.33% id in 349 aa.
 
    0.631
ECA1097
Similar to Pseudomonas putida protein secretion ABC efflux system, permease and ATP-binding protein pp0804 SWALL:AAN66429 (EMBL:AE016777) (722 aa) fasta scores: E(): 5.9e-111, 46.31% id in 691 aa, and to Salmonella typhi putative type i secretion protein, ATP-binding protein sty2877 SWALL:Q8Z4H9 (EMBL:AL627276) (718 aa) fasta scores: E(): 1.4e-103, 42.34% id in 692 aa.
   
   0.605
ECA3268
Putative toxin secretion ATP-binding protein; Similar to Actinobacillus pleuropneumoniae Rtx-I toxin determinant B Apxib or clyib or hlyib or appB SWALL:RT1B_ACTPL (SWALL:P26760) (707 aa) fasta scores: E(): 1.1e-55, 28.05% id in 695 aa, and to Pseudomonas putida toxin secretion ATP-binding protein pp0167 SWALL:AAN65800 (EMBL:AE016774) (718 aa) fasta scores: E(): 1.1e-188, 69.83% id in 706 aa, and to Pasteurella haemolytica leukotoxin secretion ATP-binding protein lktB SWALL:HLYB_PASHA (SWALL:P16532) (708 aa) fasta scores: E(): 1.1e-55, 27.84% id in 686 aa.
   
   0.605
ECA2694
Putative polyketide synthetase; Similar to Amycolatopsis mediterranei peptide synthetase BpsD SWALL:Q939Y2 (EMBL:Y16952) (581 aa) fasta scores: E(): 2e-44, 32.34% id in 575 aa, and to Myxococcus xanthus Ta1 SWALL:Q9Z5F4 (EMBL:AJ006977) (2393 aa) fasta scores: E(): 4e-51, 32.97% id in 552 aa.
 
  
 0.571
ehpB
Putative phenazine antibiotic biosynthesis protein; Similar to Pseudomonas chlororaphis PhzD SWALL:Q9R9G4 (EMBL:AF195615) (207 aa) fasta scores: E(): 4.5e-38, 47.29% id in 203 aa, and to Pantoea agglomerans EhpB SWALL:AAN40891 (EMBL:AF451953) (209 aa) fasta scores: E(): 1.9e-36, 46.73% id in 199 aa.
 
    0.561
ECA2564
Similar to Yersinia pestis putative solute-binding iron ABC transport protein y4043 SWALL:AAM87587 (EMBL:AE014006) (329 aa) fasta scores: E(): 4.7e-74, 62.54% id in 315 aa, and to Brucella melitensis ferric anguibactin-binding protein bmeii0607 SWALL:Q8YCC5 (EMBL:AE009697) (293 aa) fasta scores: E(): 1.2e-49, 48.09% id in 289 aa.
 
  
 0.504
ECA1487
Non-ribosomal peptide synthetase; Similar to Pseudomonas syringae syringomycin synthetase SyrE SWALL:O85168 (EMBL:AF047828) (9376 aa) fasta scores: E(): 0, 43.13% id in 6600 aa, and to Anabaena sp. 90 peptide synthetase AdpB SWALL:Q9K5M1 (EMBL:AJ269505) (5060 aa) fasta scores: E(): 2.8e-208, 34.22% id in 4859 aa.
 
  
 0.495
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.