STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2026Putative exported protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa4390 SWALL:Q9HW14 (EMBL:AE004854) (335 aa) fasta scores: E(): 2.8e-59, 43.23% id in 340 aa, and to Pseudomonas putida conserved hypothetical protein pp1357 SWALL:AAN66980 (EMBL:AE016779) (375 aa) fasta scores: E(): 6.3e-60, 44.97% id in 338 aa. (349 aa)    
Predicted Functional Partners:
ECA0960
Putative restriction enzyme; Similar to Pseudomonas putida hypothetical protein Pp3692 SWALL:AAN69289 (EMBL:AE016787) (891 aa) fasta scores: E(): 2.6e-122, 40.84% id in 857 aa, and weakly similar to Campylobacter jejuni RloG SWALL:Q8RJJ2 (EMBL:AF486547) (797 aa) fasta scores: E(): 0.034, 20.58% id in 850 aa, and to Campylobacter jejuni RloE SWALL:Q8RN16 (EMBL:AF486555) (800 aa) fasta scores: E(): 0.12, 21.43% id in 849 aa.
  
     0.551
ECA2981
Putative exported protein; Similar to Leptospira interrogans conserved hypothetical protein lb047 SWALL:AAN51606 (EMBL:AE011593) (440 aa) fasta scores: E(): 1.7e-05, 23.3% id in 339 aa, and to Shewanella oneidensis hypothetical protein so1002 SWALL:AAN54075 (EMBL:AE015544) (770 aa) fasta scores: E(): 5.4e-05, 25.16% id in 445 aa.
  
     0.549
ECA3265
Hypothetical protein; No significant database matches.
  
     0.534
pilL
Putative Type IV pilus protein; Similar to Salmonella dublin, and Salmonella typhi PilL SWALL:Q9K334 (EMBL:AF247502) (414 aa) fasta scores: E(): 8.9e-32, 44.98% id in 449 aa, and to Yersinia pseudotuberculosis PilL SWALL:Q8KR32 (EMBL:AY047316) (356 aa) fasta scores: E(): 3.8e-31, 42.72% id in 440 aa.
  
     0.524
ECA2515
Hypothetical protein; No significant database matches.
  
     0.481
ECA0978
Putative DNA-binding protein; Similar to Escherichia coli hypothetical protein yggl or b2959 SWALL:YGGL_ECOLI (SWALL:P38521) (108 aa) fasta scores: E(): 4e-30, 66.66% id in 108 aa, and to Shigella flexneri orf, conserved hypothetical protein yggl or sf2956 SWALL:AAN44437 (EMBL:AE015308) (118 aa) fasta scores: E(): 5e-30, 66.66% id in 108 aa.
  
     0.445
waaG
Similar to Escherichia coli lipopolysaccharide core biosynthesis protein Rfag or WaaG or pcsa or b3631 SWALL:RFAG_ECOLI (SWALL:P25740) (374 aa) fasta scores: E(): 1.2e-87, 58.69% id in 368 aa, and to Salmonella typhimurium lipopolysaccharide core biosynthesis protein Rfag or WaaG or stm3722 SWALL:O68269 (EMBL:AF026386) (374 aa) fasta scores: E(): 1.5e-89, 60.05% id in 368 aa.
  
     0.440
ECA0520
Similar to Salmonella typhi hypothetical protein Sty4523 SWALL:Q8Z1M1 (EMBL:AL627282) (599 aa) fasta scores: E(): 7.4e-73, 50.24% id in 609 aa.
  
     0.421
ECA2027
Putative acyltransferase; Similar to Pseudomonas aeruginosa hypothetical protein Pa4338 SWALL:Q9HW63 (EMBL:AE004850) (426 aa) fasta scores: E(): 4.1e-97, 57.42% id in 411 aa, and to Bacteroides thetaiotaomicron acyltransferase bt1546 SWALL:AAO76653 (EMBL:AE016932) (335 aa) fasta scores: E(): 2.4e-05, 28.27% id in 237 aa.
       0.415
ECA0524
Similar to Pseudomonas aeruginosa conserved hypothetical protein SWALL:AAN62197 (EMBL:AF440523) (263 aa) fasta scores: E(): 4e-15, 31.71% id in 227 aa, and to Salmonella typhi hypothetical protein Sty4529 sty4529 SWALL:Q8Z1L6 (EMBL:AL627282) (259 aa) fasta scores: E(): 5.5e-35, 46.22% id in 225 aa.
  
     0.412
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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