STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2038Similar to Agrobacterium tumefaciens hypothetical protein atu3948 or agr_l_1808 SWALL:Q8U8Z0 (EMBL:AE009325) (397 aa) fasta scores: E(): 2.3e-76, 51.96% id in 381 aa, and to Ralstonia solanacearum hypothetical protein rsc2709 or rs00013 SWALL:Q8XVW8 (EMBL:AL646071) (376 aa) fasta scores: E(): 1.1e-66, 48.8% id in 375 aa. (380 aa)    
Predicted Functional Partners:
ECA2039
Similar to Agrobacterium tumefaciens ornithine cyclodeaminase ArcB or Ocd SWALL:OCD_AGRT4 (SWALL:Q59701) (356 aa) fasta scores: E(): 5.7e-15, 27.42% id in 299 aa, and to Rhizobium meliloti ornithine cyclodeaminase 1 Ocd1 or rb0419 or smb20433 SWALL:OCD1_RHIME (SWALL:P58338) (329 aa) fasta scores: E(): 1.6e-25, 35.49% id in 324 aa.
 
   
 0.855
ECA2040
Catabolic threonine dehydratase; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri threonine dehydratase catabolic TdcB or b3117 or c3875 or z4469 or ecs3997 or sf3157 SWALL:THD2_ECOLI (SWALL:P05792) (329 aa) fasta scores: E(): 1.8e-38, 39.44% id in 322 aa, and to Pseudomonas aeruginosa probable serine/threonine dehydratase, degradative pa2683 SWALL:Q9I0F5 (EMBL:AE004696) (320 aa) fasta scores: E(): 4.2e-90, 74.13% id in 317 aa.
    
 0.840
ECA1856
Putative FAD-binding oxidase; Similar to Yersinia pestis hypothetical protein ypo2407 or y1932 SWALL:AAM85498 (EMBL:AJ414152) (1018 aa) fasta scores: E(): 0, 82.41% id in 1018 aa, and to Escherichia coli hypothetical protein ydij or b1687 SWALL:YDIJ_ECOLI (SWALL:P77748) (1018 aa) fasta scores: E(): 0, 79.05% id in 1017 aa.
  
 
  0.666
ECA2041
Putative DNA-binding protein; Similar to Bradyrhizobium japonicum Bll7235 protein SWALL:BAC52500 (EMBL:AP005961) (219 aa) fasta scores: E(): 5.9e-45, 62.5% id in 200 aa, and to Ralstonia solanacearum hypothetical protein rsp1517 or rs04794 SWALL:Q8XPW9 (EMBL:AL646085) (214 aa) fasta scores: E(): 4.9e-34, 49.01% id in 202 aa.
 
     0.619
pucG
Similar to Bacillus subtilis purine catabolism protein PucG SWALL:PUCG_BACSU (SWALL:O32148) (416 aa) fasta scores: E(): 1.9e-78, 52.73% id in 402 aa, and to Xanthomonas campestris serine-pyruvate aminotransferase xcc0283 SWALL:Q8PDQ2 (EMBL:AE012124) (418 aa) fasta scores: E(): 2.2e-93, 59.7% id in 407 aa.
    
  0.560
eda
Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri Khg/kdpg aldolase [includes: 4-hydroxy-2-oxoglutarate aldolase and 2- dehydro-3-deoxyphosphogluconate aldolase Eda or Hga or KdgA or b1850 or c2263 or z2902 or ecs2560 or sf1860 SWALL:ALKH_ECOLI (SWALL:P10177) (213 aa) fasta scores: E(): 1.2e-67, 89.15% id in 212 aa, and to Erwinia chrysanthemi khg/kdpg aldolase [includes: 4-hydroxy-2-oxoglutarate aldolase Eda or KdgA SWALL:ALKH_ERWCH (SWALL:P38448) (213 aa) fasta scores: E(): 7e-67, 89.2% id in 213 aa.
    
  0.532
ECA3947
Similar to Pseudomonas putida D-isomer specific 2-hydroxyacid dehydrogenase family protein pp4589 SWALL:AAN70162 (EMBL:AE016791) (310 aa) fasta scores: E(): 4.3e-61, 56.63% id in 309 aa, and to Pseudomonas aeruginosa probable 2-hydroxyacid dehydrogenase pa1296 SWALL:Q9I448 (EMBL:AE004559) (310 aa) fasta scores: E(): 5.3e-54, 51.94% id in 308 aa.
     
  0.502
aceA
Isocitrate lyase; Similar to Escherichia coli, and Escherichia coli O6 isocitrate lyase AceA or Icl or b4015 or c4972 SWALL:ACEA_ECOLI (SWALL:P05313) (434 aa) fasta scores: E(): 4.7e-157, 86.8% id in 432 aa.
     
  0.502
aceB
Similar to Escherichia coli malate synthase A AceB or Mas or b4014 SWALL:MASY_ECOLI (SWALL:P08997) (533 aa) fasta scores: E(): 6.4e-180, 82.04% id in 529 aa.
     
  0.502
ldhA
Similar to Escherichia coli D-lactate dehydrogenase LdhA or HslI or HtpH or b1380 SWALL:LDHD_ECOLI (SWALL:P52643) (329 aa) fasta scores: E(): 1e-102, 80.36% id in 326 aa; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
  
 0.429
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.