STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2039Similar to Agrobacterium tumefaciens ornithine cyclodeaminase ArcB or Ocd SWALL:OCD_AGRT4 (SWALL:Q59701) (356 aa) fasta scores: E(): 5.7e-15, 27.42% id in 299 aa, and to Rhizobium meliloti ornithine cyclodeaminase 1 Ocd1 or rb0419 or smb20433 SWALL:OCD1_RHIME (SWALL:P58338) (329 aa) fasta scores: E(): 1.6e-25, 35.49% id in 324 aa. (313 aa)    
Predicted Functional Partners:
ECA2038
Similar to Agrobacterium tumefaciens hypothetical protein atu3948 or agr_l_1808 SWALL:Q8U8Z0 (EMBL:AE009325) (397 aa) fasta scores: E(): 2.3e-76, 51.96% id in 381 aa, and to Ralstonia solanacearum hypothetical protein rsc2709 or rs00013 SWALL:Q8XVW8 (EMBL:AL646071) (376 aa) fasta scores: E(): 1.1e-66, 48.8% id in 375 aa.
 
   
 0.852
ECA2040
Catabolic threonine dehydratase; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri threonine dehydratase catabolic TdcB or b3117 or c3875 or z4469 or ecs3997 or sf3157 SWALL:THD2_ECOLI (SWALL:P05792) (329 aa) fasta scores: E(): 1.8e-38, 39.44% id in 322 aa, and to Pseudomonas aeruginosa probable serine/threonine dehydratase, degradative pa2683 SWALL:Q9I0F5 (EMBL:AE004696) (320 aa) fasta scores: E(): 4.2e-90, 74.13% id in 317 aa.
 
  
 0.835
ECA2041
Putative DNA-binding protein; Similar to Bradyrhizobium japonicum Bll7235 protein SWALL:BAC52500 (EMBL:AP005961) (219 aa) fasta scores: E(): 5.9e-45, 62.5% id in 200 aa, and to Ralstonia solanacearum hypothetical protein rsp1517 or rs04794 SWALL:Q8XPW9 (EMBL:AL646085) (214 aa) fasta scores: E(): 4.9e-34, 49.01% id in 202 aa.
 
  
 0.661
ECA0705
Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa.
     
 0.527
putA
Bifunctional PutA protein [includes: proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
  
  
 0.497
cfa6
Similar to Pseudomonas syringae type I polyketide synthase Cfa6 SWALL:Q9Z3T9 (EMBL:AF098795) (2731 aa) fasta scores: E(): 0, 60.14% id in 2725 aa, and to Polyangium cellulosum Soraphen polyketide synthase A SorA SWALL:Q9ADL6 (EMBL:U24241) (6315 aa) fasta scores: E(): 0, 43.21% id in 2277 aa.
  
  
 0.470
dadA
D-amino acid dehydrogenase small subunit; Oxidative deamination of D-amino acids; Belongs to the DadA oxidoreductase family.
 
  
 0.454
ECA4116
Similar to Escherichia coli aerobactin siderophore biosynthesis protein IucC SWALL:IUCC_ECOLI (SWALL:Q47318) (580 aa) fasta scores: E(): 9.5e-19, 29.59% id in 321 aa, and to Legionella pneumophila FrgA SWALL:P94901 (EMBL:U76559) (575 aa) fasta scores: E(): 2.6e-18, 23.43% id in 542 aa.
 
  
 0.423
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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