STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2040Catabolic threonine dehydratase; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri threonine dehydratase catabolic TdcB or b3117 or c3875 or z4469 or ecs3997 or sf3157 SWALL:THD2_ECOLI (SWALL:P05792) (329 aa) fasta scores: E(): 1.8e-38, 39.44% id in 322 aa, and to Pseudomonas aeruginosa probable serine/threonine dehydratase, degradative pa2683 SWALL:Q9I0F5 (EMBL:AE004696) (320 aa) fasta scores: E(): 4.2e-90, 74.13% id in 317 aa. (324 aa)    
Predicted Functional Partners:
ECA2039
Similar to Agrobacterium tumefaciens ornithine cyclodeaminase ArcB or Ocd SWALL:OCD_AGRT4 (SWALL:Q59701) (356 aa) fasta scores: E(): 5.7e-15, 27.42% id in 299 aa, and to Rhizobium meliloti ornithine cyclodeaminase 1 Ocd1 or rb0419 or smb20433 SWALL:OCD1_RHIME (SWALL:P58338) (329 aa) fasta scores: E(): 1.6e-25, 35.49% id in 324 aa.
 
  
 0.835
ECA2038
Similar to Agrobacterium tumefaciens hypothetical protein atu3948 or agr_l_1808 SWALL:Q8U8Z0 (EMBL:AE009325) (397 aa) fasta scores: E(): 2.3e-76, 51.96% id in 381 aa, and to Ralstonia solanacearum hypothetical protein rsc2709 or rs00013 SWALL:Q8XVW8 (EMBL:AL646071) (376 aa) fasta scores: E(): 1.1e-66, 48.8% id in 375 aa.
     
 0.781
ilvH
Similar to Escherichia coli acetolactate synthase isozyme III small subunit IlvH or BrnP or b0078 SWALL:ILVH_ECOLI (SWALL:P00894) (163 aa) fasta scores: E(): 1.2e-48, 87.11% id in 163 aa.
  
 
 0.751
ilvN
Acetolactate synthase isozyme I small subunit; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 acetolactate synthase isozyme I small subunit IlvN or b3670 or c4595 or z5164 or ecs4611 SWALL:ILVN_ECOLI (SWALL:P08143) (96 aa) fasta scores: E(): 1.9e-22, 62.5% id in 96 aa.
  
 
 0.741
thrC
Threonine synthase; Similar to Escherichia coli threonine synthase ThrC or b0004 SWALL:THRC_ECOLI (SWALL:P00934) (428 aa) fasta scores: E(): 4.2e-135, 80.51% id in 426 aa.
  
 
 0.730
thrA
Similar to Escherichia coli bifunctional aspartokinase/homoserine dehydrogenase I [includes: aspartokinase I; homoserine dehydrogenase I] thra or thra1 or thra2 or b0002 SWALL:AK1H_ECOLI (SWALL:P00561) (820 aa) fasta scores: E(): 0, 82.41% id in 819 aa; In the C-terminal section; belongs to the homoserine dehydrogenase family.
  
 
 0.684
metL
Similar to Escherichia coli bifunctional aspartokinase/homoserine dehydrogenase II MetL or MetM or b3940 SWALL:AK2H_ECOLI (SWALL:P00562) (809 aa) fasta scores: E(): 0, 83.12% id in 800 aa; In the C-terminal section; belongs to the homoserine dehydrogenase family.
  
 
 0.684
ilvD
Similar to Escherichia coli dihydroxy-acid dehydratase IlvD or b3771 SWALL:ILVD_ECOLI (SWALL:P05791) (616 aa) fasta scores: E(): 9.7e-207, 87.98% id in 616 aa; Belongs to the IlvD/Edd family.
 
  
 0.658
ilvG
Similar to Escherichia coli acetolactate synthase isozyme II large subunit IlvG or b3767 SWALL:ILVG_ECOLI (SWALL:P00892) (548 aa) fasta scores: E(): 9.5e-169, 80.22% id in 546 aa.
 
 0.658
ilvM
Acetolactate synthase isozyme II small subunit; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri acetolactate synthase isozyme II small subunit IlvM or b3769 or c4691 or sf3844 SWALL:ILVM_ECOLI (SWALL:P13048) (86 aa) fasta scores: E(): 1.8e-18, 63.52% id in 85 aa.
  
 
 0.627
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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