Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ECA2044Putative membrane protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein yeaq or b1795 or c2200 or z2837 or ecs2504 SWALL:YEAQ_ECOLI (SWALL:P76246) (82 aa) fasta scores: E(): 5.4e-25, 85.18% id in 81 aa, and to Salmonella enterica subsp. enterica serovar Typhi Ty2 putative membrane protein SWALL:AAO68813 (EMBL:AE016838) (82 aa) fasta scores: E(): 9.8e-25, 83.95% id in 81 aa. (82 aa)    
Predicted Functional Partners:
ECA2042
Hypothetical protein; No significant database matches.
       0.522
ECA2043
Hypothetical protein; No significant database matches.
       0.522
ECA0471
Similar to Xanthomonas axonopodis hypothetical protein xac4007 SWALL:Q8PFH4 (EMBL:AE012049) (69 aa) fasta scores: E(): 6.4e-07, 47.36% id in 57 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri protein YjbJ SWALL:AAN45582 (EMBL:U00006) (71 aa) fasta scores: E(): 0.00014, 37.93% id in 58 aa.
  
  
 0.454
ECA0631
Conserved hypothetical protein; Similar to Escherichia coli O6 protein YjbJ SWALL:AAN83442 (EMBL:AE016770) (71 aa) fasta scores: E(): 1e-20, 76.05% id in 71 aa, and to Salmonella typhimurium, and Salmonella typhi putative cytoplasmic protein YjbJ SWALL:Q8XEL4 (EMBL:AE008898) (70 aa) fasta scores: E(): 5.4e-20, 77.14% id in 70 aa; Belongs to the UPF0337 (CsbD) family.
  
  
 0.454
ECA3604
Similar to Yersinia pestis putative exported protein ypo2981 SWALL:Q8ZCK3 (EMBL:AJ414154) (137 aa) fasta scores: E(): 7.6e-20, 42.3% id in 130 aa, and to Salmonella typhimurium, and Salmonella typhi putative periplasmic protein ypec or stm2407 or sty2648 SWALL:Q8XFD1 (EMBL:AE008808) (108 aa) fasta scores: E(): 1.2e-08, 37.16% id in 113 aa.
  
    0.434
blc
Outer membrane lipoprotein; Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids.
  
  
 0.410
ECA2431
Two-component response regulator; Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical response regulatory protein ypdb or b2381 or z3646 or ecs3261 or sf2444.2 SWALL:YPDB_ECOLI (SWALL:P77742) (244 aa) fasta scores: E(): 1.6e-73, 75.9% id in 249 aa, and to Klebsiella pneumoniae MrkE protein MrkE SWALL:MRKE_KLEPN (SWALL:P21649) (269 aa) fasta scores: E(): 1e-49, 73.4% id in 188 aa.
   
    0.407
ECA3353
Putative two-component system response regulator; Similar to Yersinia pestis hypothetical response regulatory protein ypo3287/y0902 ypo3287 or y0902 SWALL:Q8ZBV2 (EMBL:AJ414156) (238 aa) fasta scores: E(): 1.1e-70, 77.31% id in 238 aa, and to Salmonella typhimurium hypothetical response regulatory protein yeht yeht or stm2158 SWALL:Q8ZNN2 (EMBL:AE008796) (239 aa) fasta scores: E(): 1e-51, 55% id in 240 aa.
   
    0.407
dcuR
Two-component response regulator; Similar to Escherichia coli, and Escherichia coli O157:H7 transcriptional regulatory protein DcuR or b4124 or z5726 or ecs5106 SWALL:DCUR_ECOLI (SWALL:P39271) (239 aa) fasta scores: E(): 5.7e-51, 55.83% id in 240 aa.
   
    0.407
ECA2037
OsmC-like protein; Similar to Vibrio cholerae hypothetical protein Vca0330 SWALL:Q9KMK9 (EMBL:AE004371) (162 aa) fasta scores: E(): 1.2e-32, 56.57% id in 152 aa, and to Vibrio vulnificus predicted redox protein vv12348 SWALL:AAO10722 (EMBL:AE016804) (153 aa) fasta scores: E(): 1e-30, 53.94% id in 152 aa.
  
    0.406
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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