STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2045Putative NAD dependent epimerase/dehydratase; Similar to Streptomyces glaucescens StrP protein SWALL:Q54262 (EMBL:X78974) (358 aa) fasta scores: E(): 8.5e-33, 35.98% id in 339 aa, and to Agrobacterium tumefaciens udp-glucose 4-epimerase gale or atu4801 or agr_l_161 SWALL:Q8U6K6 (EMBL:AE009408) (378 aa) fasta scores: E(): 3.2e-31, 33.81% id in 343 aa. (342 aa)    
Predicted Functional Partners:
ECA2046
Putative bifunctional enzyme including aminotransferase and chitin synthase; Its N-terminal half is similar to several aminotransferases including Escherichia coli VioA SWALL:Q9XCW4 (EMBL:AF125322) (371 aa) fasta scores: E(): 1.6e-29, 32.31% id in 359 aa, and to Streptomyces globisporus amino transferase SWALL:AAL06659 (EMBL:AY048670) (410 aa) fasta scores: E(): 9.5e-29, 32.32% id in 396 aa. Its C-terminal half is similar to many chitin synthases such as Saprolegnia monoica chitin synthase chS SWALL:CHS_SAPMO (SWALL:P48017) (886 aa) fasta scores: E(): 6.2e-20, 24% id in 525 aa, and to [...]
 
  
 0.837
rfbF
Similar to Yersinia pestis, and Yersinia pseudotuberculosis glucose-1-phosphate cytidylyltransferase DdhA or ypo3115 or y1068 SWALL:AAN23053 (EMBL:AJ414155) (261 aa) fasta scores: E(): 1.9e-88, 80.54% id in 257 aa, and to Salmonella typhimurium glucose-1-phosphate cytidylyltransferase RfbF or stm2092 SWALL:RFBF_SALTY (SWALL:P26396) (257 aa) fasta scores: E(): 4.3e-86, 78.2% id in 257 aa.
 
 
 0.713
ECA2047
Putative exported protein; Similar to Ralstonia solanacearum hypothetical protein rsc1651 or rs04028 SWALL:Q8XYV5 (EMBL:AL646065) (394 aa) fasta scores: E(): 5.6e-36, 34.18% id in 392 aa, and to Caulobacter crescentus hypothetical protein Cc1979 SWALL:Q9A6V4 (EMBL:AE005871) (407 aa) fasta scores: E(): 1.3e-16, 25.77% id in 388 aa.
  
    0.668
rpsQ
30S ribosomal subunit protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
  
 0.667
ECA2048
Putative exported protein; Similar to Ralstonia solanacearum probable signal peptide protein rsc1650 or rs04027 SWALL:Q8XYV6 (EMBL:AL646065) (538 aa) fasta scores: E(): 1.4e-41, 34.04% id in 376 aa, and to Rhizobium loti hypothetical protein Mll5453 SWALL:Q98BS0 (EMBL:AP003006) (508 aa) fasta scores: E(): 1.6e-09, 25.22% id in 452 aa.
       0.637
rpsN
30S ribosomal subunit protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
   
  0.631
rpsS
30S ribosomal subunit protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
  0.631
rpsL
30S ribosomal subunit protein S12; With S4 and S5 plays an important role in translational accuracy.
   
 0.630
rpsC
30S ribosomal subunit protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
   
 0.602
ECA1430
Similar to Cicer arietinum dTDP-glucose 4-6-dehydratase SWALL:Q9SMJ5 (EMBL:AJ275318) (346 aa) fasta scores: E(): 1.7e-10, 28.52% id in 284 aa, and to Leptospira interrogans dTDP-glucose 4,6-dehydratase RfbB4 or la1661 SWALL:AAN48860 (EMBL:AE011344) (369 aa) fasta scores: E(): 1.2e-09, 28.67% id in 279 aa.
  
     0.596
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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