STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2049Similar to Pseudomonas aeruginosa conserved hypothetical protein SWALL:AAN62203 (EMBL:AF440523) (248 aa) fasta scores: E(): 1.8e-29, 40.67% id in 236 aa, and to Xylella fastidiosa hypothetical protein Xf1787 SWALL:Q9PCJ2 (EMBL:AE004000) (251 aa) fasta scores: E(): 3.3e-29, 38% id in 250 aa. (250 aa)    
Predicted Functional Partners:
ECA2048
Putative exported protein; Similar to Ralstonia solanacearum probable signal peptide protein rsc1650 or rs04027 SWALL:Q8XYV6 (EMBL:AL646065) (538 aa) fasta scores: E(): 1.4e-41, 34.04% id in 376 aa, and to Rhizobium loti hypothetical protein Mll5453 SWALL:Q98BS0 (EMBL:AP003006) (508 aa) fasta scores: E(): 1.6e-09, 25.22% id in 452 aa.
       0.510
ECA2047
Putative exported protein; Similar to Ralstonia solanacearum hypothetical protein rsc1651 or rs04028 SWALL:Q8XYV5 (EMBL:AL646065) (394 aa) fasta scores: E(): 5.6e-36, 34.18% id in 392 aa, and to Caulobacter crescentus hypothetical protein Cc1979 SWALL:Q9A6V4 (EMBL:AE005871) (407 aa) fasta scores: E(): 1.3e-16, 25.77% id in 388 aa.
       0.488
ECA2045
Putative NAD dependent epimerase/dehydratase; Similar to Streptomyces glaucescens StrP protein SWALL:Q54262 (EMBL:X78974) (358 aa) fasta scores: E(): 8.5e-33, 35.98% id in 339 aa, and to Agrobacterium tumefaciens udp-glucose 4-epimerase gale or atu4801 or agr_l_161 SWALL:Q8U6K6 (EMBL:AE009408) (378 aa) fasta scores: E(): 3.2e-31, 33.81% id in 343 aa.
       0.430
ECA2046
Putative bifunctional enzyme including aminotransferase and chitin synthase; Its N-terminal half is similar to several aminotransferases including Escherichia coli VioA SWALL:Q9XCW4 (EMBL:AF125322) (371 aa) fasta scores: E(): 1.6e-29, 32.31% id in 359 aa, and to Streptomyces globisporus amino transferase SWALL:AAL06659 (EMBL:AY048670) (410 aa) fasta scores: E(): 9.5e-29, 32.32% id in 396 aa. Its C-terminal half is similar to many chitin synthases such as Saprolegnia monoica chitin synthase chS SWALL:CHS_SAPMO (SWALL:P48017) (886 aa) fasta scores: E(): 6.2e-20, 24% id in 525 aa, and to [...]
       0.430
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.