STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2056Similar to Yersinia pestis putative ABC transporter permease ypo2842 SWALL:Q8ZCW6 (EMBL:AJ414154) (421 aa) fasta scores: E(): 2.8e-118, 72.4% id in 424 aa, and to Pseudomonas aeruginosa probable permease of ABC transporter pa0605 SWALL:Q9I5T3 (EMBL:AE004497) (415 aa) fasta scores: E(): 4.5e-85, 54.47% id in 402 aa. (422 aa)    
Predicted Functional Partners:
ECA2057
Similar to Yersinia pestis putative ABC transporter permease ypo2841 SWALL:Q8ZCW7 (EMBL:AJ414154) (282 aa) fasta scores: E(): 4.6e-83, 83.64% id in 269 aa, and to Pseudomonas putida polyamine ABC transporter, permease protein pp0414 SWALL:AAN66044 (EMBL:AE016775) (275 aa) fasta scores: E(): 3.4e-63, 65.13% id in 261 aa.
 
 0.998
ECA2055
Similar to Pseudomonas putida polyamine ABC transporter, periplasmic polyamine-binding protein pp0412 SWALL:AAN66042 (EMBL:AE016775) (344 aa) fasta scores: E(): 4.2e-81, 57.84% id in 344 aa, and to Yersinia pestis putative transport system periplasmic protein ypo2843 or y1391 SWALL:Q8ZCW5 (EMBL:AJ414154) (342 aa) fasta scores: E(): 5e-103, 71.84% id in 341 aa.
 
 
 0.996
potA-2
Putitive ABC-transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
 0.988
ECA4247
Similar to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu4571 or agr_l_601 SWALL:Q8U783 (EMBL:AE009385) (288 aa) fasta scores: E(): 3.3e-27, 34.36% id in 259 aa, and to Yersinia pestis putative binding-protein-dependent transport system membrane protein ypo2030 or y2280 SWALL:AAM85839 (EMBL:AJ414151) (278 aa) fasta scores: E(): 4.1e-24, 30.62% id in 271 aa.
 
 
 0.956
potF
Putrescine-binding periplasmic protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
 
  
 0.900
ECA4248
Similar to Bradyrhizobium japonicum ABC transporter permease protein blr3545 SWALL:BAC48810 (EMBL:AP005948) (293 aa) fasta scores: E(): 1.5e-10, 26.61% id in 278 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu4570 or agr_l_602 SWALL:Q8U784 (EMBL:AE009385) (285 aa) fasta scores: E(): 2e-10, 24.72% id in 275 aa.
     
  0.900
potD
Spermidine/putrescine-binding periplasmic protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
 
  
 0.890
potI
Similar to Escherichia coli, and Escherichia coli O6 putrescine transport system permease protein PotI or b0857 or c0990 SWALL:POTI_ECOLI (SWALL:P31136) (281 aa) fasta scores: E(): 2.8e-90, 86.12% id in 281 aa.
  
 0.890
potC
Spermidine/putrescine transport system permease protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 spermidine/putrescine transport system permease protein PotC or b1124 or c1399 or z1763 or ecs1500 SWALL:POTC_ECOLI (SWALL:P23859) (264 aa) fasta scores: E(): 1.2e-88, 91.01% id in 256 aa.
  
 0.886
potG
Putrescine transport ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
 
 0.848
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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