STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2072Flavodoxin; Similar to Citrobacter braakii cindoxin cinC SWALL:Q8VQF4 (EMBL:AF456128) (154 aa) fasta scores: E(): 3.2e-13, 37.5% id in 144 aa, and to Escherichia coli protein mioc mioc or b3742 SWALL:MIOC_ECOLI (SWALL:P03817) (146 aa) fasta scores: E(): 8.1e-09, 33.89% id in 118 aa. (147 aa)    
Predicted Functional Partners:
cysI
Sulfite reductase [NADPH] hemoprotein beta-component; Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate. Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
   
 0.921
ECA2071
Putative cytochrome P450; Similar to Mycobacterium leprae putative cytochrome P450 ml2088 SWALL:Q9CBE7 (EMBL:AL583924) (434 aa) fasta scores: E(): 7.1e-22, 26.3% id in 422 aa, and to Bacillus subtilis putative cytochrome P450 YjiB SWALL:YJIB_BACSU (SWALL:O34374) (396 aa) fasta scores: E(): 1.8e-20, 27.11% id in 343 aa.
    
 0.862
ECA2073
Probable oxidoreductase; Similar to Salvelinus fontinalis NADPH:adrenodoxin oxidoreductase, mitochondrial precursor SWALL:ADRO_SALFO (SWALL:P82861) (498 aa) fasta scores: E(): 1.5e-23, 31.73% id in 460 aa, and to Rhodococcus rhodochrous adrenodoxin reductase-like XplB SWALL:Q8GPH8 (EMBL:AF449421) (425 aa) fasta scores: E(): 2.2e-52, 40.32% id in 429 aa.
     0.844
entB
Enterobactin synthetase component B (isochorismatase); Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri isochorismatase EntB or EntG or b0595 or z0737 or ecs0634 or sf0509 SWALL:ENTB_ECOLI (SWALL:P15048) (285 aa) fasta scores: E(): 1.1e-69, 63.63% id in 286 aa.
   
    0.549
ECA0824
Similar to Rhodospirillum rubrum pyruvate-flavodoxin oxidoreductase NifJ SWALL:NIFJ_RHORU (SWALL:Q53046) (1191 aa) fasta scores: E(): 0, 54.73% id in 1182 aa, and to Escherichia coli probable pyruvate-flavodoxin oxidoreductase ydbk or b1378 SWALL:NIFJ_ECOLI (SWALL:P52647) (1174 aa) fasta scores: E(): 0, 78.79% id in 1174 aa. Also similar to ECA2957 (47.377% id. in 1182 aa overlap).
     
 0.528
ECA2070
Similar to Pseudomonas putida major facilitator family transporter pp3368 SWALL:AAN68972 (EMBL:AE016786) (394 aa) fasta scores: E(): 6.5e-73, 53.29% id in 379 aa, and to Xanthomonas axonopodis mfs transporter araj or xac1363 SWALL:Q8PMR3 (EMBL:AE011767) (393 aa) fasta scores: E(): 5.5e-71, 51.59% id in 376 aa.
       0.411
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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